BiocInstaller: Install/Update Bioconductor, CRAN, and github Packages
Version 1.26.0

This package is used to install and update Bioconductor, CRAN, and (some) github packages.

AuthorDan Tenenbaum and Biocore Team
Bioconductor views Infrastructure
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.26.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("BiocInstaller")

Popular man pages

biocinstallRepos: Display current Bioconductor and CRAN repositories.
biocLite: Install or update Bioconductor and CRAN packages
BiocUpgrade: Upgrade Bioconductor to the latest version available for this...
biocValid: Validate installed package versions against biocLite...
biocVersion: Bioconductor version
packageGroups: Convenience functions to return package names associated with...
useDevel: Get the 'devel' version of the BiocInstaller package.
See all...

All man pages Function index File listing

Man pages

biocinstallRepos: Display current Bioconductor and CRAN repositories.
biocLite: Install or update Bioconductor and CRAN packages
biocUpdatePackages: Update previously installed Bioconductor or CRAN packages and...
BiocUpgrade: Upgrade Bioconductor to the latest version available for this...
biocValid: Validate installed package versions against biocLite...
biocVersion: Bioconductor version
packageGroups: Convenience functions to return package names associated with...
useDevel: Get the 'devel' version of the BiocInstaller package.

Functions

BiocUpgrade Man page
RBioinf_group Man page Source code
all_group Man page Source code
biocLite Man page Source code
biocLiteInstall Source code
biocUpdatePackages Man page Source code
biocUpgrade Source code
biocValid Man page Source code
biocVersion Man page Source code
biocases_group Man page Source code
biocinstallRepos Man page Source code
dQuote Source code
dbg Source code
getAnswer Source code
getContribUrl Source code
githubInstall Source code
graph_group Source code
isDevel Man page Source code
lite_group Source code
lowerRVersionString Source code
mbniFilter Source code
message Source code
monograph_group Man page Source code
msg Source code
onAttach Source code
onLoad Source code
package_filter_masked Source code
package_filter_suppress_updates Source code
package_filter_unwriteable Source code
print.biocValid Source code
reposInstall Source code
sCurrentBiocInstaller Source code
sQuote Source code
stepAside Source code
stop Source code
tooNewPkgs Source code
update Source code
updateBiocInstaller Source code
updateBiocInstallerFinish Source code
updateFinish Source code
useDevel Man page Source code
warning Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/biocLite.R
R/biocUpdatePackages.R
R/biocValid.R
R/biocVersion.R
R/biocinstallRepos.R
R/package_groups.R
R/package_update.R
R/updateBiocInstaller.R
R/useDevel.R
R/utilities.R
R/zzz.R
inst
inst/scripts
inst/scripts/BiocInstaller.dcf
inst/scripts/biocLite.R
inst/scripts/workflows.R
inst/unitTests
inst/unitTests/test_BiocUpgrade.R
inst/unitTests/test_biocinstallRepos.R
inst/unitTests/test_package_update.R
man
man/BiocUpgrade.Rd
man/biocLite.Rd
man/biocUpdatePackages.Rd
man/biocValid.Rd
man/biocVersion.Rd
man/biocinstallRepos.Rd
man/packageGroups.Rd
man/useDevel.Rd
tests
tests/BiocInstaller_unit_tests.R
BiocInstaller documentation built on May 20, 2017, 9:45 p.m.

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