BiocInstaller: Install/Update Bioconductor, CRAN, and github Packages

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This package is used to install and update Bioconductor, CRAN, and (some) github packages.

Author
Dan Tenenbaum and Biocore Team
Date of publication
None
Maintainer
Bioconductor Package Maintainer <maintainer@bioconductor.org>
License
Artistic-2.0
Version
1.24.0

View on Bioconductor

Man pages

biocinstallRepos
Display current Bioconductor and CRAN repositories.
biocLite
Install or update Bioconductor and CRAN packages
biocUpdatePackages
Update previously installed Bioconductor or CRAN packages and...
BiocUpgrade
Upgrade Bioconductor to the latest version available for this...
biocValid
Validate installed package versions against biocLite...
biocVersion
Bioconductor version
packageGroups
Convenience functions to return package names associated with...
useDevel
Get the 'devel' version of the BiocInstaller package.

Files in this package

BiocInstaller/DESCRIPTION
BiocInstaller/NAMESPACE
BiocInstaller/NEWS
BiocInstaller/R
BiocInstaller/R/biocLite.R
BiocInstaller/R/biocUpdatePackages.R
BiocInstaller/R/biocValid.R
BiocInstaller/R/biocVersion.R
BiocInstaller/R/biocinstallRepos.R
BiocInstaller/R/package_groups.R
BiocInstaller/R/package_update.R
BiocInstaller/R/updateBiocInstaller.R
BiocInstaller/R/useDevel.R
BiocInstaller/R/utilities.R
BiocInstaller/R/zzz.R
BiocInstaller/inst
BiocInstaller/inst/scripts
BiocInstaller/inst/scripts/BiocInstaller.dcf
BiocInstaller/inst/scripts/biocLite.R
BiocInstaller/inst/unitTests
BiocInstaller/inst/unitTests/test_BiocUpgrade.R
BiocInstaller/inst/unitTests/test_biocinstallRepos.R
BiocInstaller/inst/unitTests/test_package_update.R
BiocInstaller/man
BiocInstaller/man/BiocUpgrade.Rd
BiocInstaller/man/biocLite.Rd
BiocInstaller/man/biocUpdatePackages.Rd
BiocInstaller/man/biocValid.Rd
BiocInstaller/man/biocVersion.Rd
BiocInstaller/man/biocinstallRepos.Rd
BiocInstaller/man/packageGroups.Rd
BiocInstaller/man/useDevel.Rd
BiocInstaller/tests
BiocInstaller/tests/BiocInstaller_unit_tests.R