rhdf5: HDF5 interface to R

This R/Bioconductor package provides an interface between HDF5 and R. HDF5's main features are the ability to store and access very large and/or complex datasets and a wide variety of metadata on mass storage (disk) through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and/or complex datasets between R and other software package, and for letting R applications work on datasets that are larger than the available RAM.

Author
Bernd Fischer, Gregoire Pau
Date of publication
None
Maintainer
Bernd Fischer <b.fischer@dkfz.de>
License
Artistic-2.0
Version
2.18.0

View on Bioconductor

Man pages

H5
HDF5 General Library Functions
H5A
HDF5 Attribute Interface
h5const
HDF5 library constants.
h5createAttribute
Create HDF5 attribute
h5createDataset
Create HDF5 dataset
h5createFile
Create HDF5 file
h5createGroup
Create HDF5 group
H5D
HDF5 Dataset Interface
h5errorHandling
handling of HDF5 error messages
H5F
HDF5 File Interface
H5G
HDF5 Group Interface
H5I
HDF5 Identifier Interface
H5IdComponent-class
Class "H5IdComponent"
H5L
HDF5 Link Interface
h5listIdentifier
list all valid H5 identifier.
h5ls
List the content of an HDF5 file.
H5O
HDF5 Object Interface
H5P
HDF5 Property List Interface
H5P_DATASET_ACCESS
HDF5 Dataset Access Property List Interface
H5P_DATASET_CREATE
HDF5 Dataset Create Property List Interface
H5P_LINK_CREATE
HDF5 Link Create Property List Interface
H5S
HDF5 Dataspace Interface
h5save
Saves a series of objects to an HDF5 file.
h5set_extent
Set a new dataset extension
H5T
HDF5 Datatype Interface
h5version
rhdf5 and libhdf5 version numbers
h5write
Reads and write object in HDF5 files
methods-And
Methods for Function '&' in Package 'rhdf5'
methods-Dollar1
Methods for Function '$' in Package 'rhdf5'
methods-Dollar2
~~ Methods for Function '$<-' in Package 'rhdf5' ~~
methods-subset1
Methods for Function '[' in Package 'rhdf5'
methods-subset2
Methods for Function '[<-' in Package 'rhdf5'
rhdf5
Package overview

Files in this package

rhdf5/BinaryFiles
rhdf5/CHANGES
rhdf5/DESCRIPTION
rhdf5/NAMESPACE
rhdf5/R
rhdf5/R/AllClass.R
rhdf5/R/AllMethods.R
rhdf5/R/H5.R
rhdf5/R/H5A.R
rhdf5/R/H5D.R
rhdf5/R/H5F.R
rhdf5/R/H5G.R
rhdf5/R/H5I.R
rhdf5/R/H5L.R
rhdf5/R/H5O.R
rhdf5/R/H5P.R
rhdf5/R/H5S.R
rhdf5/R/H5T.R
rhdf5/R/H5constants.R
rhdf5/R/Rhdf5.R
rhdf5/R/h5checktype.R
rhdf5/R/h5create.R
rhdf5/R/h5dump.R
rhdf5/R/h5errorHandling.R
rhdf5/R/h5ls.R
rhdf5/R/h5modifier.R
rhdf5/R/h5read.R
rhdf5/R/h5readAttributes.R
rhdf5/R/h5save.R
rhdf5/R/h5write.R
rhdf5/R/h5writeAttr.R
rhdf5/R/zzz.R
rhdf5/TODO
rhdf5/build
rhdf5/build/vignette.rds
rhdf5/cleanup
rhdf5/cleanup.win
rhdf5/inst
rhdf5/inst/NEWS.Rd
rhdf5/inst/demoChunkSize
rhdf5/inst/demoChunkSize/chunksize.pdf
rhdf5/inst/demoChunkSize/demoChunkSize.R
rhdf5/inst/doc
rhdf5/inst/doc/rhdf5.R
rhdf5/inst/doc/rhdf5.Rnw
rhdf5/inst/doc/rhdf5.pdf
rhdf5/inst/downloadHDF5
rhdf5/inst/downloadHDF5/README.txt
rhdf5/inst/downloadHDF5/downloadHDF5.sh
rhdf5/inst/downloadHDF5/replacestr.R
rhdf5/man
rhdf5/man/H5.Rd
rhdf5/man/H5A.Rd
rhdf5/man/H5D.Rd
rhdf5/man/H5F.Rd
rhdf5/man/H5G.Rd
rhdf5/man/H5I.Rd
rhdf5/man/H5IdComponent-class.Rd
rhdf5/man/H5L.Rd
rhdf5/man/H5O.Rd
rhdf5/man/H5P.Rd
rhdf5/man/H5P_DATASET_ACCESS.Rd
rhdf5/man/H5P_DATASET_CREATE.Rd
rhdf5/man/H5P_LINK_CREATE.Rd
rhdf5/man/H5S.Rd
rhdf5/man/H5T.Rd
rhdf5/man/h5const.Rd
rhdf5/man/h5createAttribute.Rd
rhdf5/man/h5createDataset.Rd
rhdf5/man/h5createFile.Rd
rhdf5/man/h5createGroup.Rd
rhdf5/man/h5errorHandling.Rd
rhdf5/man/h5listIdentifier.Rd
rhdf5/man/h5ls.Rd
rhdf5/man/h5save.Rd
rhdf5/man/h5set_extent.Rd
rhdf5/man/h5version.Rd
rhdf5/man/h5write.Rd
rhdf5/man/methods-And.Rd
rhdf5/man/methods-Dollar1.Rd
rhdf5/man/methods-Dollar2.Rd
rhdf5/man/methods-subset1.Rd
rhdf5/man/methods-subset2.Rd
rhdf5/man/rhdf5.Rd
rhdf5/src
rhdf5/src/H5.c
rhdf5/src/H5.h
rhdf5/src/H5A.c
rhdf5/src/H5A.h
rhdf5/src/H5D.c
rhdf5/src/H5D.h
rhdf5/src/H5E.c
rhdf5/src/H5E.h
rhdf5/src/H5F.c
rhdf5/src/H5F.h
rhdf5/src/H5G.c
rhdf5/src/H5G.h
rhdf5/src/H5I.c
rhdf5/src/H5I.h
rhdf5/src/H5L.c
rhdf5/src/H5L.h
rhdf5/src/H5O.c
rhdf5/src/H5O.h
rhdf5/src/H5P.c
rhdf5/src/H5P.h
rhdf5/src/H5S.c
rhdf5/src/H5S.h
rhdf5/src/H5T.c
rhdf5/src/H5T.h
rhdf5/src/H5constants.c
rhdf5/src/H5constants.h
rhdf5/src/HandleList.cpp
rhdf5/src/HandleList.h
rhdf5/src/HandleList2.h
rhdf5/src/HandleListWrap.c
rhdf5/src/HandleListcpp.h
rhdf5/src/Makevars
rhdf5/src/Makevars.win
rhdf5/src/h5dump.c
rhdf5/src/h5dump.h
rhdf5/src/h5ls.c
rhdf5/src/h5ls.h
rhdf5/src/h5writeDataFrame.c
rhdf5/src/h5writeDataFrame.h
rhdf5/src/hdf5source
rhdf5/src/hdf5source/hdf5small.tgz
rhdf5/src/includeWin
rhdf5/src/includeWin/i386
rhdf5/src/includeWin/i386/H5ACpkg.h
rhdf5/src/includeWin/i386/H5ACprivate.h
rhdf5/src/includeWin/i386/H5ACpublic.h
rhdf5/src/includeWin/i386/H5Apkg.h
rhdf5/src/includeWin/i386/H5Aprivate.h
rhdf5/src/includeWin/i386/H5Apublic.h
rhdf5/src/includeWin/i386/H5B2pkg.h
rhdf5/src/includeWin/i386/H5B2private.h
rhdf5/src/includeWin/i386/H5B2public.h
rhdf5/src/includeWin/i386/H5Bpkg.h
rhdf5/src/includeWin/i386/H5Bprivate.h
rhdf5/src/includeWin/i386/H5Bpublic.h
rhdf5/src/includeWin/i386/H5CSprivate.h
rhdf5/src/includeWin/i386/H5Cpkg.h
rhdf5/src/includeWin/i386/H5Cprivate.h
rhdf5/src/includeWin/i386/H5Cpublic.h
rhdf5/src/includeWin/i386/H5Dpkg.h
rhdf5/src/includeWin/i386/H5Dprivate.h
rhdf5/src/includeWin/i386/H5Dpublic.h
rhdf5/src/includeWin/i386/H5Edefin.h
rhdf5/src/includeWin/i386/H5Einit.h
rhdf5/src/includeWin/i386/H5Epkg.h
rhdf5/src/includeWin/i386/H5Eprivate.h
rhdf5/src/includeWin/i386/H5Epubgen.h
rhdf5/src/includeWin/i386/H5Epublic.h
rhdf5/src/includeWin/i386/H5Eterm.h
rhdf5/src/includeWin/i386/H5FDcore.h
rhdf5/src/includeWin/i386/H5FDdirect.h
rhdf5/src/includeWin/i386/H5FDfamily.h
rhdf5/src/includeWin/i386/H5FDlog.h
rhdf5/src/includeWin/i386/H5FDmpi.h
rhdf5/src/includeWin/i386/H5FDmpio.h
rhdf5/src/includeWin/i386/H5FDmpiposix.h
rhdf5/src/includeWin/i386/H5FDmulti.h
rhdf5/src/includeWin/i386/H5FDpkg.h
rhdf5/src/includeWin/i386/H5FDprivate.h
rhdf5/src/includeWin/i386/H5FDpublic.h
rhdf5/src/includeWin/i386/H5FDsec2.h
rhdf5/src/includeWin/i386/H5FDstdio.h
rhdf5/src/includeWin/i386/H5FDwindows.h
rhdf5/src/includeWin/i386/H5FLprivate.h
rhdf5/src/includeWin/i386/H5FOprivate.h
rhdf5/src/includeWin/i386/H5FSpkg.h
rhdf5/src/includeWin/i386/H5FSprivate.h
rhdf5/src/includeWin/i386/H5FSpublic.h
rhdf5/src/includeWin/i386/H5Fpkg.h
rhdf5/src/includeWin/i386/H5Fprivate.h
rhdf5/src/includeWin/i386/H5Fpublic.h
rhdf5/src/includeWin/i386/H5Gpkg.h
rhdf5/src/includeWin/i386/H5Gprivate.h
rhdf5/src/includeWin/i386/H5Gpublic.h
rhdf5/src/includeWin/i386/H5HFpkg.h
rhdf5/src/includeWin/i386/H5HFprivate.h
rhdf5/src/includeWin/i386/H5HFpublic.h
rhdf5/src/includeWin/i386/H5HGpkg.h
rhdf5/src/includeWin/i386/H5HGprivate.h
rhdf5/src/includeWin/i386/H5HGpublic.h
rhdf5/src/includeWin/i386/H5HLpkg.h
rhdf5/src/includeWin/i386/H5HLprivate.h
rhdf5/src/includeWin/i386/H5HLpublic.h
rhdf5/src/includeWin/i386/H5HPprivate.h
rhdf5/src/includeWin/i386/H5Ipkg.h
rhdf5/src/includeWin/i386/H5Iprivate.h
rhdf5/src/includeWin/i386/H5Ipublic.h
rhdf5/src/includeWin/i386/H5Lpkg.h
rhdf5/src/includeWin/i386/H5Lprivate.h
rhdf5/src/includeWin/i386/H5Lpublic.h
rhdf5/src/includeWin/i386/H5MFpkg.h
rhdf5/src/includeWin/i386/H5MFprivate.h
rhdf5/src/includeWin/i386/H5MMprivate.h
rhdf5/src/includeWin/i386/H5MMpublic.h
rhdf5/src/includeWin/i386/H5MPpkg.h
rhdf5/src/includeWin/i386/H5MPprivate.h
rhdf5/src/includeWin/i386/H5Opkg.h
rhdf5/src/includeWin/i386/H5Oprivate.h
rhdf5/src/includeWin/i386/H5Opublic.h
rhdf5/src/includeWin/i386/H5Oshared.h
rhdf5/src/includeWin/i386/H5Ppkg.h
rhdf5/src/includeWin/i386/H5Pprivate.h
rhdf5/src/includeWin/i386/H5Ppublic.h
rhdf5/src/includeWin/i386/H5RCprivate.h
rhdf5/src/includeWin/i386/H5RSprivate.h
rhdf5/src/includeWin/i386/H5Rpkg.h
rhdf5/src/includeWin/i386/H5Rprivate.h
rhdf5/src/includeWin/i386/H5Rpublic.h
rhdf5/src/includeWin/i386/H5SLprivate.h
rhdf5/src/includeWin/i386/H5SMpkg.h
rhdf5/src/includeWin/i386/H5SMprivate.h
rhdf5/src/includeWin/i386/H5STprivate.h
rhdf5/src/includeWin/i386/H5Spkg.h
rhdf5/src/includeWin/i386/H5Sprivate.h
rhdf5/src/includeWin/i386/H5Spublic.h
rhdf5/src/includeWin/i386/H5TSprivate.h
rhdf5/src/includeWin/i386/H5Tpkg.h
rhdf5/src/includeWin/i386/H5Tprivate.h
rhdf5/src/includeWin/i386/H5Tpublic.h
rhdf5/src/includeWin/i386/H5Vprivate.h
rhdf5/src/includeWin/i386/H5WBprivate.h
rhdf5/src/includeWin/i386/H5Zpkg.h
rhdf5/src/includeWin/i386/H5Zprivate.h
rhdf5/src/includeWin/i386/H5Zpublic.h
rhdf5/src/includeWin/i386/H5api_adpt.h
rhdf5/src/includeWin/i386/H5config.h
rhdf5/src/includeWin/i386/H5overflow.h
rhdf5/src/includeWin/i386/H5private.h
rhdf5/src/includeWin/i386/H5pubconf.h
rhdf5/src/includeWin/i386/H5public.h
rhdf5/src/includeWin/i386/H5version.h
rhdf5/src/includeWin/i386/H5win32defs.h
rhdf5/src/includeWin/i386/SZconfig.h
rhdf5/src/includeWin/i386/hdf5.h
rhdf5/src/includeWin/i386/rice.h
rhdf5/src/includeWin/i386/ricehdf.h
rhdf5/src/includeWin/i386/szip_adpt.h
rhdf5/src/includeWin/x64
rhdf5/src/includeWin/x64/H5ACpkg.h
rhdf5/src/includeWin/x64/H5ACprivate.h
rhdf5/src/includeWin/x64/H5ACpublic.h
rhdf5/src/includeWin/x64/H5Apkg.h
rhdf5/src/includeWin/x64/H5Aprivate.h
rhdf5/src/includeWin/x64/H5Apublic.h
rhdf5/src/includeWin/x64/H5B2pkg.h
rhdf5/src/includeWin/x64/H5B2private.h
rhdf5/src/includeWin/x64/H5B2public.h
rhdf5/src/includeWin/x64/H5Bpkg.h
rhdf5/src/includeWin/x64/H5Bprivate.h
rhdf5/src/includeWin/x64/H5Bpublic.h
rhdf5/src/includeWin/x64/H5CSprivate.h
rhdf5/src/includeWin/x64/H5Cpkg.h
rhdf5/src/includeWin/x64/H5Cprivate.h
rhdf5/src/includeWin/x64/H5Cpublic.h
rhdf5/src/includeWin/x64/H5Dpkg.h
rhdf5/src/includeWin/x64/H5Dprivate.h
rhdf5/src/includeWin/x64/H5Dpublic.h
rhdf5/src/includeWin/x64/H5Edefin.h
rhdf5/src/includeWin/x64/H5Einit.h
rhdf5/src/includeWin/x64/H5Epkg.h
rhdf5/src/includeWin/x64/H5Eprivate.h
rhdf5/src/includeWin/x64/H5Epubgen.h
rhdf5/src/includeWin/x64/H5Epublic.h
rhdf5/src/includeWin/x64/H5Eterm.h
rhdf5/src/includeWin/x64/H5FDcore.h
rhdf5/src/includeWin/x64/H5FDdirect.h
rhdf5/src/includeWin/x64/H5FDfamily.h
rhdf5/src/includeWin/x64/H5FDlog.h
rhdf5/src/includeWin/x64/H5FDmpi.h
rhdf5/src/includeWin/x64/H5FDmpio.h
rhdf5/src/includeWin/x64/H5FDmpiposix.h
rhdf5/src/includeWin/x64/H5FDmulti.h
rhdf5/src/includeWin/x64/H5FDpkg.h
rhdf5/src/includeWin/x64/H5FDprivate.h
rhdf5/src/includeWin/x64/H5FDpublic.h
rhdf5/src/includeWin/x64/H5FDsec2.h
rhdf5/src/includeWin/x64/H5FDstdio.h
rhdf5/src/includeWin/x64/H5FDwindows.h
rhdf5/src/includeWin/x64/H5FLprivate.h
rhdf5/src/includeWin/x64/H5FOprivate.h
rhdf5/src/includeWin/x64/H5FSpkg.h
rhdf5/src/includeWin/x64/H5FSprivate.h
rhdf5/src/includeWin/x64/H5FSpublic.h
rhdf5/src/includeWin/x64/H5Fpkg.h
rhdf5/src/includeWin/x64/H5Fprivate.h
rhdf5/src/includeWin/x64/H5Fpublic.h
rhdf5/src/includeWin/x64/H5Gpkg.h
rhdf5/src/includeWin/x64/H5Gprivate.h
rhdf5/src/includeWin/x64/H5Gpublic.h
rhdf5/src/includeWin/x64/H5HFpkg.h
rhdf5/src/includeWin/x64/H5HFprivate.h
rhdf5/src/includeWin/x64/H5HFpublic.h
rhdf5/src/includeWin/x64/H5HGpkg.h
rhdf5/src/includeWin/x64/H5HGprivate.h
rhdf5/src/includeWin/x64/H5HGpublic.h
rhdf5/src/includeWin/x64/H5HLpkg.h
rhdf5/src/includeWin/x64/H5HLprivate.h
rhdf5/src/includeWin/x64/H5HLpublic.h
rhdf5/src/includeWin/x64/H5HPprivate.h
rhdf5/src/includeWin/x64/H5Ipkg.h
rhdf5/src/includeWin/x64/H5Iprivate.h
rhdf5/src/includeWin/x64/H5Ipublic.h
rhdf5/src/includeWin/x64/H5Lpkg.h
rhdf5/src/includeWin/x64/H5Lprivate.h
rhdf5/src/includeWin/x64/H5Lpublic.h
rhdf5/src/includeWin/x64/H5MFpkg.h
rhdf5/src/includeWin/x64/H5MFprivate.h
rhdf5/src/includeWin/x64/H5MMprivate.h
rhdf5/src/includeWin/x64/H5MMpublic.h
rhdf5/src/includeWin/x64/H5MPpkg.h
rhdf5/src/includeWin/x64/H5MPprivate.h
rhdf5/src/includeWin/x64/H5Opkg.h
rhdf5/src/includeWin/x64/H5Oprivate.h
rhdf5/src/includeWin/x64/H5Opublic.h
rhdf5/src/includeWin/x64/H5Oshared.h
rhdf5/src/includeWin/x64/H5Ppkg.h
rhdf5/src/includeWin/x64/H5Pprivate.h
rhdf5/src/includeWin/x64/H5Ppublic.h
rhdf5/src/includeWin/x64/H5RCprivate.h
rhdf5/src/includeWin/x64/H5RSprivate.h
rhdf5/src/includeWin/x64/H5Rpkg.h
rhdf5/src/includeWin/x64/H5Rprivate.h
rhdf5/src/includeWin/x64/H5Rpublic.h
rhdf5/src/includeWin/x64/H5SLprivate.h
rhdf5/src/includeWin/x64/H5SMpkg.h
rhdf5/src/includeWin/x64/H5SMprivate.h
rhdf5/src/includeWin/x64/H5STprivate.h
rhdf5/src/includeWin/x64/H5Spkg.h
rhdf5/src/includeWin/x64/H5Sprivate.h
rhdf5/src/includeWin/x64/H5Spublic.h
rhdf5/src/includeWin/x64/H5TSprivate.h
rhdf5/src/includeWin/x64/H5Tpkg.h
rhdf5/src/includeWin/x64/H5Tprivate.h
rhdf5/src/includeWin/x64/H5Tpublic.h
rhdf5/src/includeWin/x64/H5Vprivate.h
rhdf5/src/includeWin/x64/H5WBprivate.h
rhdf5/src/includeWin/x64/H5Zpkg.h
rhdf5/src/includeWin/x64/H5Zprivate.h
rhdf5/src/includeWin/x64/H5Zpublic.h
rhdf5/src/includeWin/x64/H5api_adpt.h
rhdf5/src/includeWin/x64/H5config.h
rhdf5/src/includeWin/x64/H5overflow.h
rhdf5/src/includeWin/x64/H5private.h
rhdf5/src/includeWin/x64/H5pubconf.h
rhdf5/src/includeWin/x64/H5public.h
rhdf5/src/includeWin/x64/H5version.h
rhdf5/src/includeWin/x64/H5win32defs.h
rhdf5/src/includeWin/x64/SZconfig.h
rhdf5/src/includeWin/x64/hdf5.h
rhdf5/src/includeWin/x64/rice.h
rhdf5/src/includeWin/x64/ricehdf.h
rhdf5/src/includeWin/x64/szip_adpt.h
rhdf5/src/includeWin/x64/szlib.h
rhdf5/src/libwin
rhdf5/src/libwin/i386
rhdf5/src/libwin/i386/libhdf5ForBioC-7.dll
rhdf5/src/libwin/i386/libsz-2.dll
rhdf5/src/libwin/x64
rhdf5/src/libwin/x64/libhdf5ForBioC-7.dll
rhdf5/src/libwin/x64/libsz-2.dll
rhdf5/src/myhdf5.h
rhdf5/src/printdatatype.c
rhdf5/src/printdatatype.h
rhdf5/src/wrap.c
rhdf5/vignettes
rhdf5/vignettes/rhdf5.Rnw