This packages offers a pipeline for import, processing and analysis of ToF-SIMS 2D image data. Import of Iontof and Ulvac-Phi raw or preprocessed data is supported. For rawdata, mass calibration, peak picking and peak integration exist. General funcionality includes data binning, scaling, image subsetting and visualization. A range of multivariate tools common in the ToF-SIMS community are implemented (PCA, MCR, MAF, MNF). An interface to the bioconductor image processing package EBImage offers image segmentation functionality.
|Lorenz Gerber, Viet Mai Hoang
|DataImport ImagingMassSpectrometry ImmunoOncology Infrastructure MassSpectrometry Metabolomics Proteomics
|Lorenz Gerber <firstname.lastname@example.org>
|View on Bioconductor
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