This packages offers a pipeline for import, processing and analysis of ToF-SIMS 2D image data. Import of Iontof and Ulvac-Phi raw or preprocessed data is supported. For rawdata, mass calibration, peak picking and peak integration exist. General funcionality includes data binning, scaling, image subsetting and visualization. A range of multivariate tools common in the ToF-SIMS community are implemented (PCA, MCR, MAF, MNF). An interface to the bioconductor image processing package EBImage offers image segmentation functionality.
|Author||Lorenz Gerber, Viet Mai Hoang|
|Bioconductor views||DataImport ImagingMassSpectrometry ImmunoOncology Infrastructure MassSpectrometry Metabolomics Proteomics|
|Maintainer||Lorenz Gerber <[email protected]>|
|Package repository||View on Bioconductor|
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