Files in tofsims
Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
src/utilities.cpp
src/LapackEigen.cpp
src/Makevars.win
src/RcppExports.cpp
src/nn.cpp
src/readRawPhi.cpp
src/Makevars
src/c_importer.cpp
R/prcomp.R
R/importers.R
R/MNF.R
R/RcppExports.R
R/tofsims-package.R
R/PCAnalysis.R
R/AllGenericDefinition.R
R/AllGetters.R
R/MAF.R
R/PeakList.R
R/AllClassDefinition.R
R/MassImage.R
R/princomp.R
R/AllSetters.R
R/PCA.R
R/MCR.R
R/MassSpectra.R
vignettes/workflow.Rmd
vignettes/rawimport.png
vignettes/workflow.bib
man/points.Rd
man/findClosestMatch.Rd
man/MNF.Rd
man/nPeaks.Rd
man/PCA-class.Rd
man/zdim-MassSpectra-method.Rd
man/SNR.Rd
man/calibration.Rd
man/ndim.Rd
man/RSS.Rd
man/ctable.Rd
man/scale.Rd
man/addPeaks.Rd
man/MAF.Rd
man/coordToPixel-MassImage-numeric-method.Rd
man/addFixedWidth.Rd
man/EigenDecompose.Rd
man/pcaLoadings.Rd
man/getTOFs.Rd
man/plot-MassImage-missing-method.Rd
man/makeTIC-MassSpectra-method.Rd
man/legend.col.Rd
man/unitMassPeaks.Rd
man/readBIF.Rd
man/bwApply.Rd
man/ndim-MassSpectra-method.Rd
man/PCAnalysis.Rd
man/MCR.Rd
man/changePeakWidth.Rd
man/ydim-MassImage-method.Rd
man/extract.header.data.Rd
man/MassImage.Rd
man/subset.Rd
man/plot-PeakList-missing-method.Rd
man/PrComp.Rd
man/noPlottingData.Rd
man/imageMatrix.Rd
man/coordToPixel.Rd
man/poissonScaling.Rd
man/analysisName.Rd
man/calibPoints.Rd
man/ydim.Rd
man/dim-MassSpectra-method.Rd
man/PrinComp.Rd
man/show-MassSpectra-method.Rd
man/overlayPlot.Rd
man/plot.Rd
man/smootherSpline.Rd
man/parIndicesSearch.Rd
man/recalibrate.Rd
man/peakMzs.Rd
man/peakPick.Rd
man/nnMean.Rd
man/mz.Rd
man/itzipName-set.Rd
man/RSS-MCR-method.Rd
man/cReadRawPhi.Rd
man/validPCAObject.Rd
man/xySpec.Rd
man/iters-MCR-method.Rd
man/calibPointNew.Rd
man/check.extension.Rd
man/analysis.Rd
man/ydim-PCA-method.Rd
man/pcaMAF.Rd
man/peakIDs.Rd
man/binning.Rd
man/nearestNeighbourMean.Rd
man/xdim-set.Rd
man/makeTIC.Rd
man/LapackGenEigen.Rd
man/computeNoise.Rd
man/show-MassImage-method.Rd
man/image.Rd
man/look.for.itzip.property.Rd
man/smootherGolay.Rd
man/baseObject.Rd
man/peaks2Spectra.Rd
man/iters.Rd
man/import.Rd
man/validPeakListObject.Rd
man/nnMNF.Rd
man/resids.Rd
man/baseObject-PrComp-method.Rd
man/baseObject-PrinComp-method.Rd
man/covDiffCalc.Rd
man/xy.Rd
man/show-PeakList-method.Rd
man/removePeaks.Rd
man/instrument.Rd
man/import.raw.Rd
man/manualSelectPeaks.Rd
man/noPlottingData-PCA-method.Rd
man/peakWidths.Rd
man/pcaScores.Rd
man/findPeakWidth.Rd
man/smoothScatter.Rd
man/tofsims-package.Rd
man/dim-MassImage-method.Rd
man/validMassImageObject.Rd
man/xdim-MassImage-method.Rd
man/MassSpectra.Rd
man/reduceSpectrumResolution.Rd
man/ydim-set.Rd
man/xdim.Rd
man/PeakList.Rd
man/zdim.Rd
man/resids-MCR-method.Rd
man/nComp.Rd
man/nz.Rd
man/validMassSpectraObject.Rd
man/xdim-PCA-method.Rd
man/itzipName.Rd
man/computeMNF.Rd
tests/testthat.R
tests/testthat/test_PCA.R
tests/testthat/test_MassSpectra.R
tests/testthat/test_MassImage.R
tests/testthat/test_import.R
inst/doc/workflow.Rmd
inst/doc/workflow.html
inst/doc/workflow.R
