overlayPlot: generic overlayPlot

In tofsims: Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data

Description

This function takes as input a list with objects of type MassSpectra. The easiest way to obtain the input data, is to use mclapply from the parallel package.

Usage

overlayPlot(objectList, ...)

## S4 method for signature 'list'
overlayPlot(
  objectList,
  ...,
  type = "l",
  mzRange = c(1, 200),
  PeakListObj = NULL,
  cex.legend = 0.5
)

Arguments

objectList	list with object of type MassSpectra
...	additional args
type	character type of plot, usually 'l'
mzRange	vector numeric lower and upper range for plotting the spectra
PeakListObj	object a PeakList object can be provided to plot peaks
cex.legend	numeric text size

Value

graphical output

graphical output

Author(s)

Lorenz Gerber [e-mail]

Examples

library(tofsimsData)
data('tofsimsData')
overlayPlot(list(testImage, testSpectra))

tofsims documentation built on Nov. 8, 2020, 5:10 p.m.