plot-PeakList-missing-method: Method 'plot()' for 'MassSpectra'

In tofsims: Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data

Description

Method defining plot() for the MassSpectra class plot has no generic by default

Usage

## S4 method for signature 'PeakList,missing'
plot(
  x,
  y,
  ...,
  mzRange = c(0, 200),
  plotDeriv = FALSE,
  plotPeaks = TRUE,
  plotWidths = TRUE
)

Arguments

x	object of type PeakList
y	missing
...	further args
mzRange	vector or length two, indicating the mz range to be plotted
plotDeriv	boolean plot derivate if available
plotPeaks	boolean plot peaks if available
plotWidths	boolean plot peak widths if available

Details

The output of this method is adapted for plotting mass spectra. Uncalibrated data is plotted as xy plot while uncalibrated data is plotted as barplot. The parameter mzRange allows choosing the plot range directly according to the mz number (when calibrated).

Value

plot spectra with peaks and peak widths

tofsims documentation built on Nov. 8, 2020, 5:10 p.m.