arrayMvout: multivariate outlier detection for expression array QA

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This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Author
Z. Gao, A. Asare, R. Wang, V. Carey
Date of publication
None
Maintainer
V. Carey <stvjc@channing.harvard.edu>
License
Artistic-2.0
Version
1.32.0

View on Bioconductor

Man pages

ArrayOutliers
Multivariate outlier detection based on PCA of QA statistics
ArrayOutliers-methods
ArrayOutliers - wrapper for platform-specific multivariate...
arrOutStruct-class
Class "arrOutStruct" container for ArrayOutliers output

Files in this package

arrayMvout/DESCRIPTION
arrayMvout/NAMESPACE
arrayMvout/R
arrayMvout/R/mv.calout.detect.R
arrayMvout/R/zg.R
arrayMvout/build
arrayMvout/build/vignette.rds
arrayMvout/data
arrayMvout/data/afxsubDEG.rda
arrayMvout/data/afxsubQC.rda
arrayMvout/data/fig3map.rda
arrayMvout/data/ilmQA.rda
arrayMvout/data/itnQA.rda
arrayMvout/data/maqcQA.rda
arrayMvout/data/s12cDEG.rda
arrayMvout/data/s12cQC.rda
arrayMvout/data/spikQA.rda
arrayMvout/inst
arrayMvout/inst/doc
arrayMvout/inst/doc/arrayMvout.R
arrayMvout/inst/doc/arrayMvout.Rnw
arrayMvout/inst/doc/arrayMvout.pdf
arrayMvout/man
arrayMvout/man/ArrayOutliers-methods.Rd
arrayMvout/man/ArrayOutliers.Rd
arrayMvout/man/arrOutStruct-class.Rd
arrayMvout/vignettes
arrayMvout/vignettes/arrayMvout-asdad.pdf
arrayMvout/vignettes/arrayMvout-lkadas.pdf
arrayMvout/vignettes/arrayMvout-lkda.pdf
arrayMvout/vignettes/arrayMvout.Rnw
arrayMvout/vignettes/doim.png
arrayMvout/vignettes/s12c.png