arrayMvout: multivariate outlier detection for expression array QA

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

AuthorZ. Gao, A. Asare, R. Wang, V. Carey
Date of publicationNone
MaintainerV. Carey <stvjc@channing.harvard.edu>
LicenseArtistic-2.0
Version1.32.0

View on Bioconductor

Functions

afxsubDEG Man page
afxsubQC Man page
ArrayOutliers Man page
ArrayOutliers,AffyBatch,numeric,ANY-method Man page
ArrayOutliers,ANY,missing,missing-method Man page
ArrayOutliers,data.frame,numeric,ANY-method Man page
ArrayOutliers,LumiBatch,numeric,ANY-method Man page
ArrayOutliers-methods Man page
arrOutStruct-class Man page
fig3map Man page
ILM1 Man page
ilmQA Man page
itnQA Man page
maqcQA Man page
plot,arrOutStruct,ANY-method Man page
s12c Man page
s12cDEG Man page
s12cQC Man page
show,arrOutStruct-method Man page
spikQA Man page

Files

arrayMvout/DESCRIPTION
arrayMvout/NAMESPACE
arrayMvout/R
arrayMvout/R/mv.calout.detect.R arrayMvout/R/zg.R
arrayMvout/build
arrayMvout/build/vignette.rds
arrayMvout/data
arrayMvout/data/afxsubDEG.rda
arrayMvout/data/afxsubQC.rda
arrayMvout/data/fig3map.rda
arrayMvout/data/ilmQA.rda
arrayMvout/data/itnQA.rda
arrayMvout/data/maqcQA.rda
arrayMvout/data/s12cDEG.rda
arrayMvout/data/s12cQC.rda
arrayMvout/data/spikQA.rda
arrayMvout/inst
arrayMvout/inst/doc
arrayMvout/inst/doc/arrayMvout.R
arrayMvout/inst/doc/arrayMvout.Rnw
arrayMvout/inst/doc/arrayMvout.pdf
arrayMvout/man
arrayMvout/man/ArrayOutliers-methods.Rd arrayMvout/man/ArrayOutliers.Rd arrayMvout/man/arrOutStruct-class.Rd
arrayMvout/vignettes
arrayMvout/vignettes/arrayMvout-asdad.pdf
arrayMvout/vignettes/arrayMvout-lkadas.pdf
arrayMvout/vignettes/arrayMvout-lkda.pdf
arrayMvout/vignettes/arrayMvout.Rnw
arrayMvout/vignettes/doim.png
arrayMvout/vignettes/s12c.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.