arrayMvout: multivariate outlier detection for expression array QA

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("arrayMvout")
AuthorZ. Gao, A. Asare, R. Wang, V. Carey
Bioconductor views Infrastructure Microarray QualityControl
Date of publicationNone
MaintainerV. Carey <stvjc@channing.harvard.edu>
LicenseArtistic-2.0
Version1.32.0

View on Bioconductor

Functions

afxsubDEG Man page
afxsubQC Man page
ArrayOutliers Man page
ArrayOutliers,AffyBatch,numeric,ANY-method Man page
ArrayOutliers,ANY,missing,missing-method Man page
ArrayOutliers,data.frame,numeric,ANY-method Man page
ArrayOutliers,LumiBatch,numeric,ANY-method Man page
ArrayOutliers-methods Man page
arrOutStruct-class Man page
fig3map Man page
ILM1 Man page
ilmQA Man page
itnQA Man page
maqcQA Man page
plot,arrOutStruct,ANY-method Man page
s12c Man page
s12cDEG Man page
s12cQC Man page
show,arrOutStruct-method Man page
spikQA Man page

Files

DESCRIPTION
NAMESPACE
R
R/mv.calout.detect.R R/zg.R
build
build/vignette.rds
data
data/afxsubDEG.rda
data/afxsubQC.rda
data/fig3map.rda
data/ilmQA.rda
data/itnQA.rda
data/maqcQA.rda
data/s12cDEG.rda
data/s12cQC.rda
data/spikQA.rda
inst
inst/doc
inst/doc/arrayMvout.R
inst/doc/arrayMvout.Rnw
inst/doc/arrayMvout.pdf
man
man/ArrayOutliers-methods.Rd man/ArrayOutliers.Rd man/arrOutStruct-class.Rd
vignettes
vignettes/arrayMvout-asdad.pdf
vignettes/arrayMvout-lkadas.pdf
vignettes/arrayMvout-lkda.pdf
vignettes/arrayMvout.Rnw
vignettes/doim.png
vignettes/s12c.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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