rRDP: Interface to the RDP Classifier

Seamlessly interfaces RDP classifier (version 2.9).

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("rRDP")
AuthorMichael Hahsler, Anurag Nagar
Bioconductor views Classification Genetics Infrastructure Microbiome Sequencing
Date of publicationNone
MaintainerMichael Hahsler <mhahsler@lyle.smu.edu>
LicenseGPL-2 | file LICENSE
Version1.10.0

View on Bioconductor

Functions

accuracy Man page
confusionTable Man page
decode_Greengenes Man page
decode_RDP Man page
encode_Greengenes Man page
encode_RDP Man page
GenClass16S Man page
predict Man page
predict.RDPClassifier Man page
print.RDPClassifier Man page
rdp Man page
removeRDP Man page
trainRDP Man page

Files

DESCRIPTION
LICENSE
NAMESPACE
R
R/RDP.R R/accuracy.R R/annotation.R
build
build/vignette.rds
inst
inst/doc
inst/doc/rRDP.R
inst/doc/rRDP.Rnw
inst/doc/rRDP.pdf
inst/examples
inst/examples/Firmicutes.fasta
inst/examples/RNA_example.fasta
inst/examples/testSequences.fasta
inst/examples/trainingSequences.fasta
inst/java
inst/java/lib
inst/java/lib/AlignmentTools.jar
inst/java/lib/ReadSeq.jar
inst/java/lib/TaxonomyTree.jar
inst/java/lib/commons-cli-1.2.jar
inst/java/lib/commons-io-2.4.jar
inst/java/lib/jcommon-1.0.16.jar
inst/java/rRNAClassifier.properties
inst/java/rdp_classifier.jar
java
java/README
man
man/RDP.Rd man/accuracy.Rd man/annotation.Rd
vignettes
vignettes/rRDP.Rnw
vignettes/rRDP.bib
vignettes/sequence.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.