rRDP: Interface to the RDP Classifier

Seamlessly interfaces RDP classifier (version 2.9).

Author
Michael Hahsler, Anurag Nagar
Date of publication
None
Maintainer
Michael Hahsler <mhahsler@lyle.smu.edu>
License
GPL-2 | file LICENSE
Version
1.8.0

View on Bioconductor

Man pages

accuracy
Calculate Classification Accuracy
annotation
Decoding and Encoding Phylogenetic Classification Annotations
RDP
Ribosomal Database Project (RDP) Classifier for 16S rRNA

Files in this package

rRDP/DESCRIPTION
rRDP/LICENSE
rRDP/NAMESPACE
rRDP/R
rRDP/R/RDP.R
rRDP/R/accuracy.R
rRDP/R/annotation.R
rRDP/build
rRDP/build/vignette.rds
rRDP/inst
rRDP/inst/doc
rRDP/inst/doc/rRDP.R
rRDP/inst/doc/rRDP.Rnw
rRDP/inst/doc/rRDP.pdf
rRDP/inst/examples
rRDP/inst/examples/Firmicutes.fasta
rRDP/inst/examples/RNA_example.fasta
rRDP/inst/examples/testSequences.fasta
rRDP/inst/examples/trainingSequences.fasta
rRDP/inst/java
rRDP/inst/java/lib
rRDP/inst/java/lib/AlignmentTools.jar
rRDP/inst/java/lib/ReadSeq.jar
rRDP/inst/java/lib/TaxonomyTree.jar
rRDP/inst/java/lib/commons-cli-1.2.jar
rRDP/inst/java/lib/commons-io-2.4.jar
rRDP/inst/java/lib/jcommon-1.0.16.jar
rRDP/inst/java/rRNAClassifier.properties
rRDP/inst/java/rdp_classifier.jar
rRDP/java
rRDP/java/README
rRDP/man
rRDP/man/RDP.Rd
rRDP/man/accuracy.Rd
rRDP/man/annotation.Rd
rRDP/vignettes
rRDP/vignettes/rRDP.Rnw
rRDP/vignettes/rRDP.bib
rRDP/vignettes/sequence.bib