plot_EvG: display the association between expression values and...
In GGBase: GGBase infrastructure for genetics of gene expression package GGtools

display the association between expression values and genotypes in an smlSet instance

1	plot_EvG(gsym, rsid, sms, ...)

`gsym`	instance of class `genesym` or `probeId`, casting a string that names a gene (which will be looked up using the `annotation` slot of `sms`) or a probe which must be resident on the array underlying the expression content of `sms`
`rsid`	instance of class `rsid` naming a SNP with genotype values given among the columns of the `smList` components of `sms`
`sms`	an instance of `smlSet`
`...`	additional parameter to `plot`

When the genotype is categorical, will use boxplots; when genotype has been imputed and includes expected allele counts, will use a scatterplot.

a plot is rendered on the current display

VJ Carey <stvjc@channing.harvard.edu>

 if ("GGtools" %in% installed.packages()[,1]) {
  s20 = getSS("GGtools", "20")
  plot_EvG(genesym("CPNE1"), rsid("rs6060535"), s20)
 }

GGBase documentation built on Nov. 8, 2020, 5:45 p.m.

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