GenRank: Candidate gene prioritization based on convergent evidence

Methods for ranking genes based on convergent evidence obtained from multiple independent evidence layers. This package adapts three methods that are popular for meta-analysis.

AuthorChakravarthi Kanduri
Date of publicationNone
MaintainerChakravarthi Kanduri <chakra.kanduri@gmail.com>
LicenseArtistic-2.0
Version1.2.0
https://github.com/chakri9/GenRank

View on Bioconductor

Files

GenRank/DESCRIPTION
GenRank/NAMESPACE
GenRank/R
GenRank/R/add_genes.R GenRank/R/comb_pval.R GenRank/R/compute_CE.R GenRank/R/compute_RP.R GenRank/R/compute_pfp.R GenRank/R/generate_permutation_RP.R GenRank/R/rank_genes.R
GenRank/build
GenRank/build/vignette.rds
GenRank/inst
GenRank/inst/NEWS
GenRank/inst/doc
GenRank/inst/doc/GenRank_Vignette.R
GenRank/inst/doc/GenRank_Vignette.Rmd
GenRank/inst/doc/GenRank_Vignette.html
GenRank/inst/extdata
GenRank/inst/extdata/CE_RP_toydata.txt
GenRank/inst/extdata/CE_RP_toydata_small.txt
GenRank/inst/extdata/CE_toydata.txt
GenRank/inst/extdata/CombP_toydata.txt
GenRank/inst/extdata/CombP_toydata_small.txt
GenRank/inst/extdata/RP_toydata.txt
GenRank/man
GenRank/man/CombP.Rd GenRank/man/ComputeCE.Rd GenRank/man/ComputeRP.Rd
GenRank/tests
GenRank/tests/testthat
GenRank/tests/testthat.R
GenRank/tests/testthat/test_CombP.R
GenRank/tests/testthat/test_compute_CE.R
GenRank/tests/testthat/test_compute_RP.R
GenRank/vignettes
GenRank/vignettes/CE_scoring.pdf
GenRank/vignettes/CE_scoring.png
GenRank/vignettes/Figure.png
GenRank/vignettes/Figure1.png
GenRank/vignettes/GenRank_Vignette.Rmd
GenRank/vignettes/custom.css

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.