CharlesJB/metagene: A package to produce metagene plots

This package produces metagene plots to compare the behavior of DNA-interacting proteins at selected groups of genes/features. Bam files are used to increase the resolution. Multiple combination of group of bam files and/or group of genomic regions can be compared in a single analysis. Bootstraping analysis is used to compare the groups and locate regions with statistically different enrichment profiles.

Getting started

Package details

AuthorCharles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>, Fabien Claude Lamaze <fabien.lamaze.1@ulaval.ca>, Rawane Samb <rawane.samb.1@ulaval.ca>, Cedric Lippens <lippens.cedric@protonmail>, Astrid Louise Deschenes <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca> and Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>.
Bioconductor views Alignment ChIPSeq Coverage Genetics MultipleComparison Sequencing
MaintainerCharles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>
LicenseArtistic-2.0 | file LICENSE
Version2.19.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("CharlesJB/metagene")
CharlesJB/metagene documentation built on Dec. 20, 2020, 2:33 p.m.