get_promoters_txdb: Extract Entrez genes promoters from TxDb object.
In CharlesJB/metagene: A package to produce metagene plots
Description
Usage
Arguments
Value
Examples
Description
Extract Entrez genes promoters from TxDb object.
Usage
1
get_promoters_txdb(txdb, upstream = 1000, downstream = 1000)
Arguments
txdb
A valid TxDb object.
upstream
The number of nucleotides upstream of TSS.
downstream
The number of nucleotides downstream of TSS.
Value
A GRanges object that contains the promoters infos.
Examples
1
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## Not run:
# require(TxDb.Hsapiens.UCSC.hg19.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
promoters_hg19 <- get_promoters_txdb(txdb)
## End(Not run)
CharlesJB/metagene documentation built on July 11, 2021, 11:48 a.m.
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Description Usage Arguments Value Examples
Description
Extract Entrez genes promoters from TxDb object.
Usage
1 | get_promoters_txdb(txdb, upstream = 1000, downstream = 1000)
|
Arguments
txdb |
A valid |
upstream |
The number of nucleotides upstream of TSS. |
downstream |
The number of nucleotides downstream of TSS. |
Value
A GRanges object that contains the promoters infos.
Examples
1 2 3 4 5 6 | ## Not run:
# require(TxDb.Hsapiens.UCSC.hg19.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
promoters_hg19 <- get_promoters_txdb(txdb)
## End(Not run)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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