cleanUpdTSeq: This package classifies putative polyadenylation sites as true or false/internally oligodT primed

This package uses the Naive Bayes classifier (from e1071) to assign probability values to putative polyadenylation sites (pA sites) based on training data from zebrafish. This will allow the user to separate true, biologically relevant pA sites from false, oligodT primed pA sites.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("cleanUpdTSeq")
AuthorSarah Sheppard, Jianhong Ou, Nathan Lawson, Lihua Julie Zhu
Bioconductor views GeneRegulation Genetics SequenceMatching Sequencing
Date of publicationNone
MaintainerSarah Sheppard <Sarah.Sheppard@umassmed.edu>; Jianhong Ou <Jianhong.Ou@umassmed.edu>; Lihua Julie Zhu <Julie.Zhu@umassmed.edu>
LicenseGPL-2
Version1.12.0

View on Bioconductor

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