cleanUpdTSeq: This package classifies putative polyadenylation sites as true or false/internally oligodT primed

This package implements a Naive Bayes classifier for accurate identification of polyadenylation sites (pA sites) from oligodT based 3 prime end sequencing such as PAS-Seq, PolyA-Seq and RNA-Seq. The classifer is highly accurate and outperforms heuristic methods.

Package details

AuthorSarah Sheppard, Jianhong Ou, Nathan Lawson, Lihua Julie Zhu
Bioconductor views GeneRegulation Genetics SequenceMatching Sequencing
MaintainerJianhong Ou <Jianhong.Ou@duke.edu>; Lihua Julie Zhu <Julie.Zhu@umassmed.edu>
LicenseGPL-2
Version1.28.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cleanUpdTSeq")

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cleanUpdTSeq documentation built on Nov. 8, 2020, 8:30 p.m.