modelInfo-class: Class '"modelInfo"'

In cleanUpdTSeq: This package classifies putative polyadenylation sites as true or false/internally oligodT primed

Description

An object of class "modelInfo" represents the information of sequence to use in the analysis

Objects from the Class

Objects can be created by calls of the form new("modelInfo", upstream, downstream, wordSize, alphabe, genome).

Slots

genome

Name of the genome to use to get sequence. To find out a list of available genomes, please type available.genomes() in R.

upstream

This is the length of upstream sequence to use in the analysis.

downstream

This is the length of downstream sequence to use in the analysis.

wordSize

This is the size of the word to use as a feature for the upstream sequence. wordSize = 6 should always be used.

alphabet

These are the bases to use, for example DNA bases ACTG.

Methods

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Get or set the slot of modelInfo

cleanUpdTSeq documentation built on Nov. 8, 2020, 8:30 p.m.