fCCAC: functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
Version 1.2.0

An application of functional canonical correlation analysis to assess covariance of nucleic acid sequencing datasets such as chromatin immunoprecipitation followed by deep sequencing (ChIP-seq).

AuthorPedro Madrigal <pm12@sanger.ac.uk>
Bioconductor views Coverage Genetics Sequencing Transcription
Date of publicationNone
MaintainerPedro Madrigal <pm12@sanger.ac.uk>
LicenseArtistic-2.0
Version1.2.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("fCCAC")

Getting started

Package overview

Popular man pages

fccac: functional Canonical Correlation Analysis to evaluate...
fCCAC-internal: fCCAC internal functions
fCCAC-package: functional Canonical Correlation Analysis to evaluate...
heatmapfCCAC: Heatmap of F values obtained by Canonical Correlation...
See all...

All man pages Function index File listing

Man pages

fccac: functional Canonical Correlation Analysis to evaluate...
fCCAC-internal: fCCAC internal functions
fCCAC-package: functional Canonical Correlation Analysis to evaluate...
heatmapfCCAC: Heatmap of F values obtained by Canonical Correlation...

Functions

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/fccac.R
R/heatmapfCCAC.R
R/multiplot.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/fCCAC.R
inst/doc/fCCAC.Rnw
inst/doc/fCCAC.pdf
inst/extdata
inst/extdata/chr21_H3K4me3_1.bw
inst/extdata/chr21_H3K4me3_2.bw
inst/extdata/chr21_H3K4me3_3.bw
inst/extdata/chr21_merged_ACT_K4.bed
inst/unitTests
inst/unitTests/test_fCCAC.R
man
man/fCCAC-internal.Rd
man/fCCAC-package.Rd
man/fccac.Rd
man/heatmapfCCAC.Rd
tests
tests/runTests.R
vignettes
vignettes/fCCAC.Rnw
fCCAC documentation built on May 20, 2017, 10:45 p.m.

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