gagneurlab/OUTRIDER: OUTRIDER - OUTlier in RNA-Seq fInDER
Identification of aberrant gene expression in RNA-seq data. Read count expectations are modeled by an autoencoder to control for confounders in the data. Given these expectations, the RNA-seq read counts are assumed to follow a negative binomial distribution with a gene-specific dispersion. Outliers are then identified as read counts that significantly deviate from this distribution. Furthermore, OUTRIDER provides useful plotting functions to analyze and visualize the results.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Alignment GeneExpression Genetics ImmunoOncology RNASeq Sequencing Transcriptomics |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.20.1 |
| URL | https://github.com/gagneurlab/OUTRIDER |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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