API for gagneurlab/OUTRIDER
OUTRIDER - OUTlier RNA-Seq fInDER

Global functions
OUTRIDER Man page Source code
OutriderDataSet Man page Source code
OutriderDataSet-class Man page
ZscoreMatrix Source code
aberrant Man page Source code
autoCorrect Man page Source code
breakTies Source code
checkAutoCorrectExists Source code
checkRowNames Source code
compileResults Source code
computeGeneLength Man page Source code
computePvalues Man page
computePvalues,OutriderDataSet-method Man page Man page
computeZscores Man page
computeZscores,OutriderDataSet-method Man page
counts Man page
counts,OutriderDataSet-method Man page
counts.OutriderDataSet Source code
counts.replace.OutriderDataSet Source code
counts<-,OutriderDataSet,matrix-method Man page Man page
dens Source code
estimateSizeFactors Man page
estimateSizeFactors,OutriderDataSet-method Man page Man page
estimateSizeFactors.OUTRIDER Source code
filterExp Source code
filterExpression Man page
filterExpression,OutriderDataSet-method Man page
filterZeros Source code
fit Man page
fit,OutriderDataSet-method Man page Man page
fitNB Source code
fitNegBinom Source code
fpkm Man page
fpm Man page
getDispEstsData Source code
getPlotDistributionData Source code
getXColors Source code
gradloglikelihood Source code
initialSizeMu Source code
log2fc Source code
loglikelihood Source code
makeExampleOutriderDataSet Man page Source code
normFactors.replace.OutriderDataSet Source code
normalizationFactors Man page
normalizationFactors,OutriderDataSet-method Man page
normalizationFactors.OutriderDataSet Source code
normalizationFactors<-,OutriderDataSet,DataFrame-method Man page Man page
normalizationFactors<-,OutriderDataSet,NULL-method Man page Man page
normalizationFactors<-,OutriderDataSet,data.frame-method Man page
normalizationFactors<-,OutriderDataSet,matrix-method Man page Man page
pVal Source code
pValMatrix Source code
pValNorm Source code
padjMatrix Man page Source code
plotAberrantPerSample Man page Source code
plotAberrantPerSamplePlotly Man page
plotCountCorHeatmap Man page Source code
plotCountCorHeatmapPlotly Man page Source code
plotDispEsts,OutriderDataSet-method Man page
plotExpressionRank Man page Source code
plotFPKM Man page Source code
plotQQ Man page Source code
plotQQplot.FraseR Source code
plotVolcano Man page Source code
readNBModel Man page Source code
results Man page Man page
results,OutriderDataSet-method Man page
showOutriderDataSet Source code
sizeFactors Man page
sizeFactors,OutriderDataSet-method Man page Man page
sizeFactors.OutriderDataSet Source code
sizeFactors.replace.OutriderDataSet Source code
sizeFactors<- Man page
sizeFactors<-,OutriderDataSet,numeric-method Man page Man page
validateCounts Source code
validateOutriderDataSet Source code
writeNBModel Man page Source code
gagneurlab/OUTRIDER documentation built on April 2, 2018, 4:12 p.m.