Files in gagneurlab/OUTRIDER
OUTRIDER - OUTlier in RNA-Seq fInDER

.Rbuildignore
.gitignore
.gitlab-ci.yml
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/AllGenerics.R R/OUTRIDER.R R/RcppExports.R R/ZscoreMatrix.R R/autoCorrectPython.R R/autoCorrectRversion.R R/class-OutriderDataSet.R R/filterExpression.R R/fitNB.R R/helperFunctions.R R/method-evaluation.R R/method-gridSearch.R R/method-plot.R R/method-results.R R/pValMatrix.R R/package-OUTRIDER.R R/sizeFactor.R README.md
codecov.yml
inst/extdata/GTExSkinSmall.tsv
inst/extdata/KremerNBaderSmall.tsv
inst/extdata/gencode.v19.genes.small.gtf.gz
man/OUTRIDER.Rd man/OutriderDataSet-class.Rd man/aberrant.Rd man/autoCorrect.Rd man/autoCorrectPython.Rd man/computeGeneLength.Rd man/computeLatentSpace.Rd man/computePvalues.Rd man/computeZscores.Rd man/counts.Rd man/filterExpression.Rd man/findEncodingDim.Rd man/fit.Rd man/fpkm.Rd man/makeExampleOutriderDataSet.Rd man/normalizationFactors.Rd man/plotFunctions.Rd man/results.Rd man/sizeFactors.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/matMult.cpp
tests/testthat.R tests/testthat/helper_test_data_set.R tests/testthat/test_OUTRIDERMain.R tests/testthat/test_OutriderDataSet.R tests/testthat/test_Rautoenc_fit.R tests/testthat/test_Rautoenc_loss.R tests/testthat/test_against_old_version.R tests/testthat/test_filtering.R tests/testthat/test_findEncodingDim.R tests/testthat/test_generics.R tests/testthat/test_methods.R tests/testthat/test_plotting.R
vignettes/OUTRIDER.Rnw
vignettes/autoencoder_sketch.png
vignettes/bibliography.bib
vignettes/gradient.tex
gagneurlab/OUTRIDER documentation built on July 16, 2018, 9:01 p.m.