fpkm: Calculate FPM and FPKM values

In gagneurlab/OUTRIDER: OUTRIDER - OUTlier in RNA-Seq fInDER

Calculate FPM and FPKM values

Description

This is the fpm and fpkm function from DESeq2. For more details see: fpkm and fpm

See Also

fpkm fpm

Examples

ods <- makeExampleOutriderDataSet()
mcols(ods)['basepairs'] <- round(rnorm(nrow(ods), 1000, 500))

mcols(ods)['basepairs']
fpkm(ods)[1:10,1:10]
fpm(ods)[1:10,1:10]

gagneurlab/OUTRIDER documentation built on April 29, 2024, 2:22 a.m.