getter_setter_functions: Getter/Setter functions

In gagneurlab/OUTRIDER: OUTRIDER - OUTlier in RNA-Seq fInDER

Getter/Setter functions

Description

This is a collection of small accessor/setter functions for easy access to the values within the OUTRIDER model.

Usage

getBestQ(ods)

zScore(ods)

pValue(ods)

padj(ods, subsetName = NULL)

## S4 method for signature 'OutriderDataSet'
dispersions(object, ...)

theta(ods)

Arguments

ods, object	An OutriderDataSet object.
subsetName	Name of a gene subset for which to store or retrieve FDR corrected p values
...	Further arguments passed on to the underlying assay function.

Value

A matrix or vector dependent on the type of data retrieved.

See Also

estimateDispersions

Examples

ods <- makeExampleOutriderDataSet(10, 10)
ods <- OUTRIDER(ods)

zScore(ods)
pValue(ods)
padj(ods)
theta(ods)
theta(ods) == 1/dispersions(ods)
getBestQ(ods)

gagneurlab/OUTRIDER documentation built on April 19, 2024, 12:20 a.m.