computeLatentSpace: Extracting the latent space
In gagneurlab/OUTRIDER: OUTRIDER - OUTlier in RNA-Seq fInDER
View source: R/controlForConfounders.R
computeLatentSpace R Documentation
Extracting the latent space
Description
Extracts the latent space from the OutriderDataSet object
determined by the autoencoder.
Usage
computeLatentSpace(ods)
Arguments
ods
An OutriderDataSet
Value
A matrix containing the latent space determined by the autoencoder.
Examples
ods <- makeExampleOutriderDataSet()
ods <- estimateSizeFactors(ods)
ods <- controlForConfounders(ods, implementation="pca")
computeLatentSpace(ods)[,1:6]
gagneurlab/OUTRIDER documentation built on April 29, 2024, 2:22 a.m.
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View source: R/controlForConfounders.R
| computeLatentSpace | R Documentation |
Extracting the latent space
Description
Extracts the latent space from the OutriderDataSet object determined by the autoencoder.
Usage
computeLatentSpace(ods)
Arguments
ods |
An OutriderDataSet |
Value
A matrix containing the latent space determined by the autoencoder.
Examples
ods <- makeExampleOutriderDataSet()
ods <- estimateSizeFactors(ods)
ods <- controlForConfounders(ods, implementation="pca")
computeLatentSpace(ods)[,1:6]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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