computeLatentSpace: Extracting the latent space

Description Usage Arguments Value Examples

View source: R/controlForConfounders.R

Description

Extracts the latent space from the OutriderDataSet object determined by the autoencoder.

Usage

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Arguments

ods

An OutriderDataSet

Value

A matrix containing the latent space determined by the autoencoder.

Examples

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ods <- makeExampleOutriderDataSet()

ods <- estimateSizeFactors(ods)
ods <- controlForConfounders(ods, implementation="pca")
computeLatentSpace(ods)[,1:6]

gagneurlab/OUTRIDER documentation built on Oct. 24, 2020, 6:49 p.m.