sampleExclusionMask: Sample exclusion

In gagneurlab/OUTRIDER: OUTRIDER - OUTlier in RNA-Seq fInDER

Sample exclusion

Description

To exclude a sample from the fit process, one can use this function to mask specific samples. This can be used if replicates are present.

Usage

sampleExclusionMask(ods, aeMatrix = FALSE)

sampleExclusionMask(ods) <- value

Arguments

ods	An OutriderDataSet object
aeMatrix	If TRUE, it returns a 0/1 matrix for the internal autoencoder functions in the form of feature x sample
value	A logical vector of the length of the samples. If TRUE, the corresponding sample will be excluded from the autoencoder fit.

Value

The exclusion vector/matrix.

Examples

ods <- makeExampleOutriderDataSet()
sampleExclusionMask(ods) <- sample(c(FALSE, TRUE), ncol(ods), replace=TRUE)

sampleExclusionMask(ods)

gagneurlab/OUTRIDER documentation built on April 29, 2024, 2:22 a.m.