Man pages for gagneurlab/OUTRIDER
OUTRIDER - OUTlier RNA-Seq fInDER

aberrantaberrant
autoCorrectautoCorrect
computeGeneLengthComputes for each gene based on the GTF file the exon length
computePvaluesThis is the main function to calculate all P-values.
computeZscoresZ score matrix
countsAccessors for the 'counts' slot of a OutriderDataSet object.
filterExpressionFilter expression
fitFit negative bionmial distribution
fpkmCalculate FPM and FPKM values
makeExampleOutriderDataSetCreate example data sets for OUTRIDER
normalizationFactorsAccessor functions for the normalization factors in a...
OUTRIDEROUTRIDER - Full analysis pipeline
OutriderDataSetThe constructor function for OutriderSettings
OutriderDataSet-classOutriderDataSet
padjMatrixFDR correction
plotAberrantPerSamplePlot aberrant events per sample
plotCountCorHeatmapCorrelation heatmap
plotDispEsts-OutriderDataSet-methodDispersion estimation plot
plotExpressionRankExpression rank plot
plotFPKMPlot histogram of FPKM values
plotQQPlot a QQ-plot for a given gene
plotVolcanoVolcano plot
readNBModelRead/Write NB Model
resultsAccessor functions for the 'result' object in a...
sizeFactorsSizeFactors accessor and estimation function
gagneurlab/OUTRIDER documentation built on April 2, 2018, 4:12 p.m.