genoCN: genotyping and copy number study tools

Simultaneous identification of copy number states and genotype calls for regions of either copy number variations or copy number aberrations

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("genoCN")
AuthorWei Sun and ZhengZheng Tang
Bioconductor views Genetics Microarray
Date of publicationNone
MaintainerWei Sun <wsun@bios.unc.edu>
LicenseGPL (>=2)
Version1.28.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/backward.R R/baum.welch.R R/check.para.R R/code.genotype.R R/estimate.para.R R/extract.postP.R R/genoCNA.R R/genoCNV.R R/get.weights.R R/output.R R/plotCN.R R/print.para.genoCN.R R/utility.R R/viterbi.R
build
build/vignette.rds
data
data/init.Para.CNA.rda
data/init.Para.CNV.rda
data/snpData.rda
data/snpInfo.rda
inst
inst/NEWS
inst/doc
inst/doc/genoCN.R
inst/doc/genoCN.Rnw
inst/doc/genoCN.pdf
man
man/code.genotype.Rd man/genoCNA.Rd man/genoCNV.Rd man/init.Para.CNA.Rd man/init.Para.CNV.Rd man/plotCN.Rd man/snpData.Rd man/snpInfo.Rd
src
src/tnorm_mle.c
src/tnorm_mle.h
src/utility.c
src/utility.h
src/xCNV.c
src/xCNV.h
test
test/get.init.Para.CNA.R test/get.init.Para.CNV.R test/simulate.R test/test_real_data.R test/test_simu_data.R test/tnorm.mle.R
vignettes
vignettes/genoCN.Rnw
vignettes/simu_data.png
vignettes/simu_data_genoCN.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.