genoCN: genotyping and copy number study tools

Simultaneous identification of copy number states and genotype calls for regions of either copy number variations or copy number aberrations

AuthorWei Sun and ZhengZheng Tang
Date of publicationNone
MaintainerWei Sun <wsun@bios.unc.edu>
LicenseGPL (>=2)
Version1.26.0

View on Bioconductor

Files

genoCN/DESCRIPTION
genoCN/NAMESPACE
genoCN/R
genoCN/R/backward.R genoCN/R/baum.welch.R genoCN/R/check.para.R genoCN/R/code.genotype.R genoCN/R/estimate.para.R genoCN/R/extract.postP.R genoCN/R/genoCNA.R genoCN/R/genoCNV.R genoCN/R/get.weights.R genoCN/R/output.R genoCN/R/plotCN.R genoCN/R/print.para.genoCN.R genoCN/R/utility.R genoCN/R/viterbi.R
genoCN/build
genoCN/build/vignette.rds
genoCN/data
genoCN/data/init.Para.CNA.rda
genoCN/data/init.Para.CNV.rda
genoCN/data/snpData.rda
genoCN/data/snpInfo.rda
genoCN/inst
genoCN/inst/NEWS
genoCN/inst/doc
genoCN/inst/doc/genoCN.R
genoCN/inst/doc/genoCN.Rnw
genoCN/inst/doc/genoCN.pdf
genoCN/man
genoCN/man/code.genotype.Rd genoCN/man/genoCNA.Rd genoCN/man/genoCNV.Rd genoCN/man/init.Para.CNA.Rd genoCN/man/init.Para.CNV.Rd genoCN/man/plotCN.Rd genoCN/man/snpData.Rd genoCN/man/snpInfo.Rd
genoCN/src
genoCN/src/tnorm_mle.c
genoCN/src/tnorm_mle.h
genoCN/src/utility.c
genoCN/src/utility.h
genoCN/src/xCNV.c
genoCN/src/xCNV.h
genoCN/test
genoCN/test/get.init.Para.CNA.R
genoCN/test/get.init.Para.CNV.R
genoCN/test/simulate.R
genoCN/test/test_real_data.R
genoCN/test/test_simu_data.R
genoCN/test/tnorm.mle.R
genoCN/vignettes
genoCN/vignettes/genoCN.Rnw
genoCN/vignettes/simu_data.png
genoCN/vignettes/simu_data_genoCN.png

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