Pathview is a tool set for pathway based data integration and visualization. It maps and renders a wide variety of biological data on relevant pathway graphs. All users need is to supply their data and specify the target pathway. Pathview automatically downloads the pathway graph data, parses the data file, maps user data to the pathway, and render pathway graph with the mapped data. In addition, Pathview also seamlessly integrates with pathway and gene set (enrichment) analysis tools for large-scale and fully automated analysis.
|Date of publication||None|
|Maintainer||Weijun Luo <email@example.com>|
combineKEGGnodes: Special treatment of nodes or edges for KEGG pathway...
cpd.accs: Mapping data between compound or gene IDs and KEGG accessions
cpdidmap: Mapping between compound IDs and KEGG accessions
demo.data: Data for demo purpose
download.kegg: Download KEGG pathway graphs and associated KGML data
eg2id: Mapping between different gene ID and annotation types
kegg.species.code: Mapping species name to KEGG code
korg: Mapping data on KEGG species code and corresponding...
mol.sum: Mapping and summation of molecular data onto standard IDs
node.color: Code molecular data as pseudo colors on the pathway graph
node.info: Extract node information from KEGG pathway
node.map: Map molecular data onto KEGG pathway nodes
pathview: Pathway based data integration and visualization
pathview-internal: Internal functions
pathview-package: Pathway based data integration and visualization
sim.mol.data: Simulate molecular data for pathview experiment
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