ChIPComp: Quantitative comparison of multiple ChIP-seq datasets

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

AuthorHao Wu, Li Chen, Zhaohui S.Qin, Chi Wang
Date of publicationNone
MaintainerLi Chen <li.chen@emory.edu>
LicenseGPL
Version1.4.0

View on Bioconductor

Files

ChIPComp/DESCRIPTION
ChIPComp/NAMESPACE
ChIPComp/R
ChIPComp/R/ChIPComp.R ChIPComp/R/makeCountSet.R ChIPComp/R/utils.R
ChIPComp/build
ChIPComp/build/vignette.rds
ChIPComp/data
ChIPComp/data/seqData.rda
ChIPComp/inst
ChIPComp/inst/CITATION
ChIPComp/inst/NEWS
ChIPComp/inst/doc
ChIPComp/inst/doc/ChIPComp.R
ChIPComp/inst/doc/ChIPComp.Rnw
ChIPComp/inst/doc/ChIPComp.pdf
ChIPComp/inst/extdata
ChIPComp/inst/extdata/Helas3.ct.bed
ChIPComp/inst/extdata/Helas3.ip1.bed
ChIPComp/inst/extdata/Helas3.ip2.bed
ChIPComp/inst/extdata/Helas3.peak.bed
ChIPComp/inst/extdata/K562.ct.bed
ChIPComp/inst/extdata/K562.ip1.bed
ChIPComp/inst/extdata/K562.ip2.bed
ChIPComp/inst/extdata/K562.peak.bed
ChIPComp/inst/extdata/conf.csv
ChIPComp/inst/unitTests
ChIPComp/inst/unitTests/test_ChIPComp.R
ChIPComp/man
ChIPComp/man/ChIPComp-package.Rd ChIPComp/man/ChIPComp.Rd ChIPComp/man/makeConf.Rd ChIPComp/man/makeCountSet.Rd ChIPComp/man/plot.Rd ChIPComp/man/print.Rd ChIPComp/man/seqData.Rd
ChIPComp/src
ChIPComp/src/Makevars.win
ChIPComp/src/mva.c
ChIPComp/tests
ChIPComp/tests/runTests.R
ChIPComp/vignettes
ChIPComp/vignettes/ChIPComp.Rnw

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