makeConf: make configurations for experimental design written in csv...
In ChIPComp: Quantitative comparison of multiple ChIP-seq datasets
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Make a list with two elements.
The first element is a data frame containing two group comparison study information.
The second element is the design matrix.
Usage
1
makeConf(sampleSheet)
Arguments
sampleSheet
A csv sheet represents ChIP experiments design.
It contains 6 columns,sampleID,condition,factor,ipReads,ctReads,peaks.
condition refers to treatment condition or cell line;
factor refers to transcription factor or histone modification;
ipReads is the ChIP sequence data in bam or bed format;
ctReads is the control sequence data in bam or bed format;
peaks is the called peaks from existing peak-calling software.
Value
A list with two elements.
The first element is a data frame containing two group comparison study information.
The second element is the design matrix.
Author(s)
Hao Wu<hao.wu@emory.edu>, Li Chen <li.chen@emory.edu>
Examples
1
2
3
confs=makeConf(system.file("extdata", "conf.csv", package="ChIPComp"))
conf=confs$conf
design=confs$design
ChIPComp documentation built on Nov. 8, 2020, 5:24 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Make a list with two elements. The first element is a data frame containing two group comparison study information. The second element is the design matrix.
Usage
1 | makeConf(sampleSheet)
|
Arguments
sampleSheet |
A csv sheet represents ChIP experiments design.
It contains 6 columns, |
Value
A list with two elements. The first element is a data frame containing two group comparison study information. The second element is the design matrix.
Author(s)
Hao Wu<hao.wu@emory.edu>, Li Chen <li.chen@emory.edu>
Examples
1 2 3 | confs=makeConf(system.file("extdata", "conf.csv", package="ChIPComp"))
conf=confs$conf
design=confs$design
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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