MGFM: Marker Gene Finder in Microarray gene expression data
Version 1.10.0

The package is designed to detect marker genes from Microarray gene expression data sets

Browse man pages Browse package API and functions Browse package files

AuthorKhadija El Amrani
Bioconductor views GeneExpression Genetics Microarray
Date of publicationNone
MaintainerKhadija El Amrani <khadija.el-amrani@charite.de>
LicenseGPL-3
Version1.10.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MGFM")

Man pages

ds2.mat: Microarray gene expression data set
getHtmlpage: Function to build HTML pages to show marker genes
getMarkerGenes: Marker Gene Detection
MGFM-internal: Internal MGFM Functions
MGFM-package: Marker Gene Finder in Microarray gene expression data

Functions

.checkIfPkgInstalled Man page
.get.annotation Man page
.isMarker Man page
MGFM Man page
MGFM-package Man page
checkIfPkgInstalled Source code
ds2.mat Man page
get.annotation Source code
getHtmlpage Man page Source code
getMarkerGenes Man page Source code
sMarker Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/getHtmlpage.R
R/getMarkerGenes.R
R/internal.R
build
build/vignette.rds
data
data/datalist
data/ds2.mat.rda
inst
inst/doc
inst/doc/MGFM.R
inst/doc/MGFM.Rnw
inst/doc/MGFM.pdf
man
man/MGFM-internal.Rd
man/MGFM-package.Rd
man/ds2.mat.Rd
man/getHtmlpage.Rd
man/getMarkerGenes.Rd
vignettes
vignettes/MGFM.Rnw
vignettes/fig
vignettes/fig/clust_dendrogram1.pdf
vignettes/fig/clust_dendrogram2.pdf
vignettes/fig/clust_dendrogram2_no_combat_norm.pdf
vignettes/references.bib
MGFM documentation built on May 20, 2017, 10:40 p.m.