ds2.mat: Microarray gene expression data set

In MGFM: Marker Gene Finder in Microarray gene expression data

Description

microarray expression data set derived from 5 tissue types (lung, liver, heart, kidney, and brain) from two GEO Series GSE1133 and GSE2361. Each tissue type is represented by 3 replicates.

Usage

data(ds2.mat)

Format

A matrix with 22283 probe sets and 15 samples.

Details

The data consist of the following samples: GSM44702, GSM18953, GSM18954, GSM44704, GSM18949, GSM18950, GSM44690, GSM18921, GSM18922, GSM44675, GSM18955, GSM18956, GSM44671, GSM18951, GSM18952

Value

microarray data matrix

Examples

data(ds2.mat)

Example output

Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: annotate
Loading required package: XML

MGFM documentation built on Nov. 8, 2020, 6:44 p.m.