seqCNA: Copy number analysis of high-throughput sequencing cancer data

Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization

AuthorDavid Mosen-Ansorena
Date of publicationNone
MaintainerDavid Mosen-Ansorena <dmosen.gn@cicbiogune.es>
LicenseGPL-3
Version1.20.0

View on Bioconductor

Files

seqCNA/DESCRIPTION
seqCNA/NAMESPACE
seqCNA/R
seqCNA/R/AllClasses.R seqCNA/R/AllGenerics.R seqCNA/R/overLapper.R seqCNA/R/seqCNA-internal.R
seqCNA/R/seqCNA_functions.r
seqCNA/R/summary-methods.R
seqCNA/build
seqCNA/build/vignette.rds
seqCNA/data
seqCNA/data/seqsumm_HCC1143.txt.gz
seqCNA/inst
seqCNA/inst/CITATION
seqCNA/inst/doc
seqCNA/inst/doc/seqCNA.R
seqCNA/inst/doc/seqCNA.Rnw
seqCNA/inst/doc/seqCNA.pdf
seqCNA/inst/extdata
seqCNA/inst/extdata/test.sam
seqCNA/man
seqCNA/man/SeqCNAInfo-class.Rd seqCNA/man/applyFilters.Rd seqCNA/man/applyThresholds.Rd seqCNA/man/plotCNProfile.Rd seqCNA/man/readSeqsumm.Rd seqCNA/man/runGLAD.Rd seqCNA/man/runSeqnorm.Rd seqCNA/man/runSeqsumm.Rd seqCNA/man/seqCNA-package.Rd seqCNA/man/seqsumm_HCC1143.Rd seqCNA/man/writeCNProfile.Rd
seqCNA/src
seqCNA/src/seqCNA.cpp
seqCNA/vignettes
seqCNA/vignettes/seqCNA.Rnw
seqCNA/vignettes/seqCNA.bib

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