|applyFilters||The function applies a set of filters to the raw profile.|
|applyThresholds||Apply thresholds on the segmented profile in order to call...|
|plotCNProfile||Plots the profile of a 'SeqCNAInfo-class' object.|
|readSeqsumm||Function that reads seqsumm summarized files.|
|runGLAD||Wrapper function that runs the GLAD segmentation algorithm on...|
|runSeqnorm||This function calls seqnorm, which normalizes the tumoural...|
|runSeqsumm||Function that generates seqsumm summarized files.|
|seqCNA-package||Copy number analysis of deep sequencing cancer data|
|seqsumm_HCC1143||Example of a seqsumm output, namely for a sequenced sample of...|
|writeCNProfile||Outputs the processed profile of a 'SeqCNAInfo-class' object...|
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