plotCNProfile: Plots the profile of a 'SeqCNAInfo-class' object.
In seqCNA: Copy number analysis of high-throughput sequencing cancer data

Description Usage Arguments Value Author(s) Examples

The plotted elements depend on the processing applied on the SeqCNAInfo-class object.

1	plotCNProfile(rco, folder = NULL)

`rco`	A `SeqCNAInfo-class` object.
`folder`	Path to the folder where the plots with the output from the `SeqCNAInfo-class` object are to be generated. If no folder is indicated or does not exist, plots will be displayed within R.

Nothing is returned from this function. Check the folder folder for a file called seqnorm_out.jpg.

David Mosen-Ansorena

data(seqsumm_HCC1143)
rco = readSeqsumm(tumour.data=seqsumm_HCC1143)
rco = applyFilters(rco, 0, 1, 0, 2, FALSE, plots=FALSE)
rco = runSeqnorm(rco, plots=FALSE)
rco = runGLAD(rco)
rco = applyThresholds(rco, seq(-0.9,4,by=0.9), 1)

plotCNProfile(rco)