Performs hybrid multiple testing that incorporates method selection and assumption evaluations into the analysis using empirical Bayes probability (EBP) estimates obtained by Grenander density estimation. For instance, for 3-group comparison analysis, Hybrid Multiple testing considers EBPs as weighted EBPs between F-test and H-test with EBPs from Shapiro Wilk test of normality as weigth. Instead of just using EBPs from F-test only or using H-test only, this methodology combines both types of EBPs through EBPs from Shapiro Wilk test of normality. This methodology uses then the law of total EBPs.

Author | Stan Pounds <stanley.pounds@stjude.org>, Demba Fofana <demba.fofana@stjude.org> |

Date of publication | None |

Maintainer | Demba Fofana <demba.fofana@stjude.org> |

License | GPL Version 2 or later |

Version | 1.18.0 |

**correlation.data:** Sample ExpressionSet object of correlation.data

**grenander.ebp:** Grenander EBP.

**GroupComp.data:** Sample ExpressionSet of GroupComp.data

**HybridMTest-package:** A powerful tool in gene expression hypothesis testing.

**hybrid.test:** Hybrid Multiple Testing of Gene Expression Data

**row.kgrp.shapiro:** Shapiro Wilk test of normality.

**row.kruskal.wallis:** Apply the Kruskal-Wallis test many times

**row.oneway.anova:** Perform one-way ANOVA for many variables.

**row.pearson:** Compute the Pearson correlation of a variable x with many...

**row.slr.shapiro:** Test normality of residuals for many variables.

**row.spearman:** Compute Spearmans rank-based correlation of many variables...

HybridMTest/DESCRIPTION

HybridMTest/NAMESPACE

HybridMTest/R

HybridMTest/R/bartlett.test2.R
HybridMTest/R/compute.sim.auc.R
HybridMTest/R/corr.sim.R
HybridMTest/R/corr.sim.summary.R
HybridMTest/R/generate.corr.data.R
HybridMTest/R/generate.kgroup.data.R
HybridMTest/R/generate.surv.data.R
HybridMTest/R/grenander.R
HybridMTest/R/grenander.ebp.R
HybridMTest/R/hybrid.test.R
HybridMTest/R/kgroup.sim.R
HybridMTest/R/kgroup.sim.summary.R
HybridMTest/R/ranksum.test.R
HybridMTest/R/row.T.test.R
HybridMTest/R/row.bartlett.R
HybridMTest/R/row.cox.R
HybridMTest/R/row.fligner.R
HybridMTest/R/row.jung.R
HybridMTest/R/row.kgrp.shapiro.R
HybridMTest/R/row.kruskal.wallis.R
HybridMTest/R/row.oneway.anova.R
HybridMTest/R/row.pearson.R
HybridMTest/R/row.ranksum.R
HybridMTest/R/row.slr.resids.R
HybridMTest/R/row.slr.shapiro.R
HybridMTest/R/row.spearman.R
HybridMTest/R/row.summary.R
HybridMTest/R/shapiro.test2.R
HybridMTest/R/surv.sim.R
HybridMTest/R/surv.sim.summary.R
HybridMTest/build

HybridMTest/build/vignette.rds

HybridMTest/data

HybridMTest/data/GroupComp.data.rda

HybridMTest/data/correlation.data.rda

HybridMTest/inst

HybridMTest/inst/doc

HybridMTest/inst/doc/HybridMTest.R

HybridMTest/inst/doc/HybridMTest.Rnw

HybridMTest/inst/doc/HybridMTest.pdf

HybridMTest/man

HybridMTest/man/GroupComp.data.Rd
HybridMTest/man/HybridMTest-package.Rd
HybridMTest/man/correlation.data.Rd
HybridMTest/man/grenander.ebp.Rd
HybridMTest/man/hybrid.test.Rd
HybridMTest/man/row.kgrp.shapiro.Rd
HybridMTest/man/row.kruskal.wallis.Rd
HybridMTest/man/row.oneway.anova.Rd
HybridMTest/man/row.pearson.Rd
HybridMTest/man/row.slr.shapiro.Rd
HybridMTest/man/row.spearman.Rd
HybridMTest/vignettes

HybridMTest/vignettes/HybridMTest.Rnw

HybridMTest/vignettes/Thumbs.db

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