correlation.data: Sample ExpressionSet object of correlation.data

In HybridMTest: Hybrid Multiple Testing

Description

An ExpressionSet object of correlation.data.

Usage

data(correlation.data)

Details

correlation.data includes expression data for 100 randomly selected genes for the subjects of the AML97 clinical trial in Lamba et al (2010). The phenotype is the log-transformed baseline DNA synthesis rate. The data set is included for an example of exploring the correlation of expression with a quantitative phenotype.

Value

expr(correlation.data)	A matrix with 100 rows and 83 columns with rows representing probe-sets and cloumns of human sample IDs.
pData(correlation.data)	A data frame with 100 rows and 2 columns. Each row represents one human sample. Column id is the column without title and x is the phenotype observations transformed by log function.

References

Lamba JK et al. Identification of predictive markers of cytarabine response in acute myeloid leukemia by integrative analysis of gene-expression profiles with multiple phenotypes. Pharmacogenomics, 12: 327-39.

See Also

ExpressionSet-class

hybrid.test; GroupComp.data

Examples

data(correlation.data)
tumor.express.set <- exprs(correlation.data)
tumor.pheno.data <- pData(correlation.data)

HybridMTest documentation built on Nov. 8, 2020, 8:29 p.m.