snp.plotter: snp.plotter

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Creates plots of p-values using single SNP and/or haplotype data. Main features of the package include options to display a linkage disequilibrium (LD) plot and the ability to plot multiple datasets simultaneously. Plots can be created using global and/or individual haplotype p-values along with single SNP p-values. Images are created as either PDF/EPS files.

Author
Augustin Luna <augustin@mail.nih.gov>, Kristin K. Nicodemus <kristin.nicodemus@well.ox.ac.uk>, <nicodemusk@mail.nih.gov>
Date of publication
2014-02-26 18:13:31
Maintainer
Augustin Luna <augustin@mail.nih.gov>
License
GPL (>= 2)
Version
0.5.1
URLs

View on CRAN

Man pages

snp.plotter
SNP/haplotype association p-value and linkage disequilibrium...

Files in this package

snp.plotter
snp.plotter/inst
snp.plotter/inst/CITATION
snp.plotter/inst/NEWS
snp.plotter/inst/ChangeLog
snp.plotter/inst/extdata
snp.plotter/inst/extdata/d2_ss.txt
snp.plotter/inst/extdata/d1_ss.txt
snp.plotter/inst/extdata/config.txt
snp.plotter/inst/extdata/palette.txt
snp.plotter/inst/extdata/null_rsq_phys_color.pdf
snp.plotter/inst/extdata/d2_hap.txt
snp.plotter/inst/extdata/null_rsq_phys_color.eps
snp.plotter/inst/extdata/d1_hap.txt
snp.plotter/inst/extdata/null_d1_controls.dat
snp.plotter/inst/doc
snp.plotter/inst/doc/using_snp_plotter.R
snp.plotter/inst/doc/using_snp_plotter.html
snp.plotter/inst/doc/using_snp_plotter.Rmd
snp.plotter/inst/doc/using_snp_plotter.md
snp.plotter/NAMESPACE
snp.plotter/R
snp.plotter/R/snp.plotter.R
snp.plotter/vignettes
snp.plotter/vignettes/using_snp_plotter.Rmd
snp.plotter/vignettes/using_snp_plotter.md
snp.plotter/MD5
snp.plotter/build
snp.plotter/build/vignette.rds
snp.plotter/DESCRIPTION
snp.plotter/man
snp.plotter/man/snp.plotter.Rd