snp.plotter: snp.plotter

Creates plots of p-values using single SNP and/or haplotype data. Main features of the package include options to display a linkage disequilibrium (LD) plot and the ability to plot multiple datasets simultaneously. Plots can be created using global and/or individual haplotype p-values along with single SNP p-values. Images are created as either PDF/EPS files.

Install the latest version of this package by entering the following in R:
install.packages("snp.plotter")
AuthorAugustin Luna <augustin@mail.nih.gov>, Kristin K. Nicodemus <kristin.nicodemus@well.ox.ac.uk>, <nicodemusk@mail.nih.gov>
Bioconductor views Genetics
Date of publication2014-02-26 18:13:31
MaintainerAugustin Luna <augustin@mail.nih.gov>
LicenseGPL (>= 2)
Version0.5.1
https://github.com/cannin/snp_plotter or http://cbdb.nimh.nih.gov/~kristin/snp.plotter.html

View on CRAN

Files

inst
inst/CITATION
inst/NEWS
inst/ChangeLog
inst/extdata
inst/extdata/d2_ss.txt
inst/extdata/d1_ss.txt
inst/extdata/config.txt
inst/extdata/palette.txt
inst/extdata/null_rsq_phys_color.pdf
inst/extdata/d2_hap.txt
inst/extdata/null_rsq_phys_color.eps
inst/extdata/d1_hap.txt
inst/extdata/null_d1_controls.dat
inst/doc
inst/doc/using_snp_plotter.R
inst/doc/using_snp_plotter.html
inst/doc/using_snp_plotter.Rmd
inst/doc/using_snp_plotter.md
NAMESPACE
R
R/snp.plotter.R
vignettes
vignettes/using_snp_plotter.Rmd
vignettes/using_snp_plotter.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/snp.plotter.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.