scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 20 inversions.
|Bioconductor views||Genetics GenomicVariation SNP|
|Package repository||View on GitHub|
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