hendriau/Summix: Summix2: A method to estimate and adjust for substructure in genetic summary data

This package contains the Summix2 method for estimating and adjusting for substructure in genetic summary allele frequency data. The function summix() estimates reference group proportions using a mixture model. The adjAF() function produces adjusted allele frequencies for an observed group with reference group proportions matching a target individual or sample. The summix_local() function estimates local ancestry mixture proportions and performs selection scans in genetic summary data.

install.packages("remotes")
remotes::install_github("hendriau/Summix")