doInternalSimulation: doInternalSimulation

In hendriau/Summix: Summix2: A suite of methods to estimate, adjust, and leverage substructure in genetic summary data

doInternalSimulation

Description

Helper function to get the within block se using re-simulation

Usage

doInternalSimulation(windows, data, reference, observed, nRefs, nSim = 1000)

Arguments

windows	is a dataframe with the Start_Pos and End_Pos
data	is the original chromosome data
reference	is a list with the names of the columns with references
observed	a character value that is the column name for the observed group
nRefs	is a vector the same lengths as reference with the number of individuals in each reference population
nSim	is the number of internal simulations for the standard error calculations

hendriau/Summix documentation built on Nov. 13, 2024, 6:53 a.m.