ancestryData: ancestryData

In hendriau/Summix: Summix2: A suite of methods to estimate, adjust, and leverage substructure in genetic summary data

ancestryData

Description

Sample dataset containing reference and observed allele frequencies to be used for examples within the Summix package.

Usage

ancestryData

Format

A data frame with 1000 rows (representing individual SNPs) and 10 columns:

POS

Position of SNP on given chromosome.

REF

Reference allele

ALT

Alternate allele

CHROM

Chromosome

reference_AF_afr

Allele frequency column of the African reference ancestry.

reference_AF_eas

Allele frequency column of the East Asian reference ancestry.

reference_AF_eur

Allele frequency column of the European reference ancestry.

reference_AF_iam

Allele frequency column of the Indigenous American reference ancestry.

reference_AF_sas

Allele frequency column of the South Asian reference ancestry.

gnomad_AF_afr

Allele frequency column of the observed gnomAD v3.1.2 African/African American population.

Source

https://gnomad.broadinstitute.org/downloads#v3

hendriau/Summix documentation built on Nov. 13, 2024, 6:53 a.m.