summix_network: summix_network

In hendriau/Summix: Summix2: A suite of methods to estimate, adjust, and leverage substructure in genetic summary data

summix_network

Description

Helper function to plot the network diagram of estimated substructure proportions and similarity between reference groups

Usage

summix_network(
  data = data,
  sum_res = sum_res,
  reference = reference,
  N_reference = N_reference,
  reference_colors = reference_colors
)

Arguments

data	A dataframe of the observed and reference allele frequencies for N genetic variants. See data formatting document at https://github.com/hendriau/Summix for more information.
sum_res	The resulting data frame from the summix function
reference	A character vector of the column names for the reference groups.
N_reference	numeric vector of the sample sizes for each of the K reference groups.
reference_colors	A character vector of length K that specifies the color each reference group node in the network plot. If not specified, this defaults to K random colors.

Value

network diagram with nodes as estimated substructure proportions and edges as degree of similarity between the given node pair

hendriau/Summix documentation built on Nov. 13, 2024, 6:53 a.m.