NuPoP: An R package for nucleosome positioning prediction
Version 1.26.1

NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.

AuthorJi-Ping Wang <jzwang@northwestern.edu>; Liqun Xi <lxi700@northwestern.edu>
Bioconductor views Classification Genetics Visualization
Date of publicationNone
MaintainerJi-Ping Wang<jzwang@northwestern.edu>
LicenseGPL-2
Version1.26.1
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("NuPoP")

Getting started

Package overview

Popular man pages

NuPoP-package: An R package for nucleosome positioning prediction
plotNuPoP: R function for plotting the predicted nucleosome positioning...
predNuPoP: R function for nucleosome positioning prediction, occupancy...
readNuPoP: R function for plotting the predicted nucleosome positioning...
See all...

All man pages Function index File listing

Man pages

NuPoP-package: An R package for nucleosome positioning prediction
plotNuPoP: R function for plotting the predicted nucleosome positioning...
predNuPoP: R function for nucleosome positioning prediction, occupancy...
readNuPoP: R function for plotting the predicted nucleosome positioning...

Functions

Files

DESCRIPTION
NAMESPACE
R
R/plotNuPoP.R
R/predNuPoP.R
R/readNuPoP.R
R/sysdata.rda
build
build/vignette.rds
inst
inst/doc
inst/doc/NuPoP-intro.R
inst/doc/NuPoP-intro.Rnw
inst/doc/NuPoP-intro.pdf
inst/extdata
inst/extdata/test.seq
inst/extdata/test.seq_Prediction4.txt
man
man/NuPoP-package.Rd
man/plotNuPoP.Rd
man/predNuPoP.Rd
man/readNuPoP.Rd
src
src/vtbfb.f90
src/vtbfbNL4.f90
vignettes
vignettes/NuPoP-intro.Rnw
vignettes/NuPoP-manual.pdf
NuPoP documentation built on May 20, 2017, 10:19 p.m.

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