readNuPoP: R function for plotting the predicted nucleosome positioning...

In NuPoP: An R package for nucleosome positioning prediction

Description

This function reads in the prediction results generated by predNuPoP for specified region.

Usage

readNuPoP(file,startPos,endPos)

Arguments

file	the prediction output file name from predNuPoP function.
startPos	the start position in the DNA sequence for prediction results plotting.
endPos	the end position in the DNA sequence for prediction results plotting.

Examples

library(NuPoP)
predNuPoP(system.file("extdata", "test.seq", package="NuPoP"),species=7,model=4)

## the prediction results are stored in the current working directory
## the user should replace "system.file("extdata","test.seq_Prediction4.txt",package="NuPoP")"
## by the actual path and file name generated from prediction.

temp=readNuPoP(system.file("extdata","test.seq_Prediction4.txt",package="NuPoP"),startPos=1,endPos=5000)

Example output

Prediction output: '/work/tmp/test.seq_Prediction4.txt'

NuPoP documentation built on Nov. 8, 2020, 7:09 p.m.