HDTD: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)

Share:

Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables.

Author
Anestis Touloumis, John C. Marioni and Simon Tavare
Date of publication
None
Maintainer
Anestis Touloumis <A.Touloumis@brighton.ac.uk>
License
GPL-3
Version
1.8.0

View on Bioconductor

Man pages

centerdata
Centering Transposable Data
covmat.hat
Estimation of the Row and of the Column Covariance Matrices.
covmat.ts
Nonparametric Tests for the Row or Column Covariance Matrix
HDTD
Estimation and Hypothesis Testing in High-Dimensional...
meanmat.hat
Estimation the Mean Matrix
meanmat.ts
Nonparametric Tests for the Mean Matrix
orderdata
Reordering Row and Column Variables
transposedata
Interchanging the Row and Column Variables in Transposable...
VEGFmouse
Vascular Endothelial Growth Factor Mouse Dataset

Files in this package

HDTD/DESCRIPTION
HDTD/NAMESPACE
HDTD/R
HDTD/R/centerdata.R
HDTD/R/covmat.hat.R
HDTD/R/covmat.hat.generic.R
HDTD/R/covmat.ts.R
HDTD/R/covmat.ts.generic.R
HDTD/R/meanmat.hat.R
HDTD/R/meanmat.ts.R
HDTD/R/meanmat.ts.generic.R
HDTD/R/orderdata.R
HDTD/R/print.covmat.hat.R
HDTD/R/print.covmat.ts.R
HDTD/R/print.meanmat.hat.R
HDTD/R/print.meanmat.ts.R
HDTD/R/projmatrix.R
HDTD/R/transposedata.R
HDTD/build
HDTD/build/vignette.rds
HDTD/data
HDTD/data/VEGFmouse.rda
HDTD/inst
HDTD/inst/CITATION
HDTD/inst/NEWS
HDTD/inst/doc
HDTD/inst/doc/Manual.R
HDTD/inst/doc/Manual.Rnw
HDTD/inst/doc/Manual.pdf
HDTD/man
HDTD/man/HDTD.Rd
HDTD/man/VEGFmouse.Rd
HDTD/man/centerdata.Rd
HDTD/man/covmat.hat.Rd
HDTD/man/covmat.ts.Rd
HDTD/man/meanmat.hat.Rd
HDTD/man/meanmat.ts.Rd
HDTD/man/orderdata.Rd
HDTD/man/transposedata.Rd
HDTD/vignettes
HDTD/vignettes/Manual.Rnw