isglobal-brge/snpfier: Get inversion status in predefined regions

scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 20 inversions.

Getting started

Package details

Bioconductor views Genetics GenomicVariation SNP
Maintainer
Licensefile LICENSE
Version1.5.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("isglobal-brge/snpfier")
isglobal-brge/snpfier documentation built on Dec. 1, 2018, 12:11 a.m.