Description Usage Arguments Value
Internal
1  computeScore(geno, refs, R2)

geno 
Vector with the sample genotypes. It is the result of

refs 
List of matrices. Each matrix has, for an SNP, the frequencies of each genotype in the different haplotypes. 
R2 
Vector with the R2 between the SNPs and the inversion status 
List with the results:
scores: Vector with the simmilarity scores of the sample
numSNPs: Numeric with the number of SNPs used in the computation
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