traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.
|Author||Li Chen, Zhaohui S.Qin|
|Bioconductor views||Alignment Coverage DataImport Genetics QualityControl Sequencing|
|Date of publication||None|
CEU: Sampled SNPs from all SNPs of CEU population in 1000 genome...
plots: Visualize of trait-associated SNPs
print.traseR: Print the outcome of taSNP enrichment analyses
querys: Retrieve trait-associated SNPs based
taSNP: trait-associated SNPs in dbGaP and NHGRI downloaded from...
taSNPLD: linkage disequilibrium (>0.8) within 100kb SNPs of all...
Tcell: Peak regions of H3K4me1 in Peripheral blood T cell
traseR: TRait-Associated SNP EnRichment analyses
traseR-package: GWAS trait-associated SNP enrichment analyses in genomic...
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