traseR: GWAS trait-associated SNP enrichment analyses in genomic intervals

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traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Author
Li Chen, Zhaohui S.Qin
Date of publication
None
Maintainer
li chen<li.chen@emory.edu>
License
GPL
Version
1.4.0

View on Bioconductor

Man pages

CEU
Sampled SNPs from all SNPs of CEU population in 1000 genome...
plots
Visualize of trait-associated SNPs
print.traseR
Print the outcome of taSNP enrichment analyses
querys
Retrieve trait-associated SNPs based
taSNP
trait-associated SNPs in dbGaP and NHGRI downloaded from...
taSNPLD
linkage disequilibrium (>0.8) within 100kb SNPs of all...
Tcell
Peak regions of H3K4me1 in Peripheral blood T cell
traseR
TRait-Associated SNP EnRichment analyses
traseR-package
GWAS trait-associated SNP enrichment analyses in genomic...

Files in this package

traseR/DESCRIPTION
traseR/NAMESPACE
traseR/R
traseR/R/plots.R
traseR/R/querys.R
traseR/R/traseR.R
traseR/build
traseR/build/vignette.rds
traseR/data
traseR/data/CEU.RData
traseR/data/Tcell.RData
traseR/data/datalist
traseR/data/taSNP.RData
traseR/data/taSNPLD.RData
traseR/inst
traseR/inst/doc
traseR/inst/doc/traseR.R
traseR/inst/doc/traseR.Rnw
traseR/inst/doc/traseR.pdf
traseR/inst/unitTests
traseR/inst/unitTests/test_traseR.R
traseR/man
traseR/man/CEU.Rd
traseR/man/Tcell.Rd
traseR/man/plots.Rd
traseR/man/print.traseR.Rd
traseR/man/querys.Rd
traseR/man/taSNP.Rd
traseR/man/taSNPLD.Rd
traseR/man/traseR-package.Rd
traseR/man/traseR.Rd
traseR/tests
traseR/tests/runTests.R
traseR/vignettes
traseR/vignettes/traseR.Rnw