traseR: GWAS trait-associated SNP enrichment analyses in genomic intervals

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("traseR")
AuthorLi Chen, Zhaohui S.Qin
Bioconductor views Alignment Coverage DataImport Genetics QualityControl Sequencing
Date of publicationNone
Maintainerli chen<li.chen@emory.edu>
LicenseGPL
Version1.4.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/plots.R R/querys.R R/traseR.R
build
build/vignette.rds
data
data/CEU.RData
data/Tcell.RData
data/datalist
data/taSNP.RData
data/taSNPLD.RData
inst
inst/doc
inst/doc/traseR.R
inst/doc/traseR.Rnw
inst/doc/traseR.pdf
inst/unitTests
inst/unitTests/test_traseR.R
man
man/CEU.Rd man/Tcell.Rd man/plots.Rd man/print.traseR.Rd man/querys.Rd man/taSNP.Rd man/taSNPLD.Rd man/traseR-package.Rd man/traseR.Rd
tests
tests/runTests.R
vignettes
vignettes/traseR.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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