taSNPLD: linkage disequilibrium (>0.8) within 100kb SNPs of all...

Description Usage Value Author(s)

Description

A GRange object taSNPLD contains linkage disequilibrium (>0.8) SNPs of all trait-associated SNPs from dbGaP and NHGRI.

Usage

1

Value

The data frame taSNPLD contains four columns,

SNP_ID

SNP rs number

seqnames

Chromosome number associated with rs number

ranges

Chromosomal position, in base pairs, associated with rs number

Trait

Trait the SNP is associated with

Trait Class

Trait class which is formed based on the phenotype tree. Close traits are grouped together to form one class

Author(s)

Li Chen <[email protected]>, Zhaohui S.Qin<[email protected]>


traseR documentation built on Oct. 31, 2019, 2:10 a.m.