print.traseR: Print the outcome of taSNP enrichment analyses

Description Usage Arguments Value Author(s) Examples

View source: R/traseR.R

Description

Print the outcome of taSNP enrichment analyses. Print the overall taSNP enrichment, trait-specific taSNP enrichment,trait-class-specific taSNP enrichment.

Usage

1
2
	## S3 method for class 'traseR'
print(x,isTopK1=FALSE,topK1=10,isTopK2=FALSE,topK2=10,trait.threshold=10,traitclass.threshold=10,...)

Arguments

x

Object returned from traseR

isTopK1

If isTopK1 is TRUE, topK1 traits are printed; otherwise, traits with p-value below Bonferroni correction threshold are printed. Default is FALSE.

topK1

Top K1 traits are printed. Default is 10.

isTopK2

If isTopK2 is TRUE, topK2 trait class are printed; otherwise, trait class with p-value below Bonferroni correction threshold are printed. Default is FALSE.

topK2

Top K2 trait class are printed. Default is 10.

trait.threshold

Traits above this threshold are reported. Default is 10.

traitclass.threshold

Trait class above this threshold are reported. Default is 10.

...

Other parameters to print

Value

Print a data frame of traits ranked by p-value

Author(s)

Li Chen <li.chen@emory.edu>, Zhaohui S.Qin<zhaohui.qin@emory.edu>

Examples

1
2
3
4
	data(taSNP)
	data(Tcell)
	x=traseR(snpdb=taSNP,region=Tcell)
	print(x)

traseR documentation built on May 20, 2017, 10:44 p.m.

Search within the traseR package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.