exomeCopy: Copy number variant detection from exome sequencing read depth

Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.

Package details

AuthorMichael Love
Bioconductor views CopyNumberVariation Genetics Sequencing
MaintainerMichael Love <michaelisaiahlove@gmail.com>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the exomeCopy package in your browser

Any scripts or data that you put into this service are public.

exomeCopy documentation built on Nov. 8, 2020, 7:45 p.m.