exomeCopy: Copy number variant detection from exome sequencing read depth

Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.

Package details

AuthorMichael Love
Bioconductor views CopyNumberVariation Genetics Sequencing
MaintainerMichael Love <michaelisaiahlove@gmail.com>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
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exomeCopy documentation built on April 29, 2020, 2:38 a.m.