Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.
|Bioconductor views||CopyNumberVariation Genetics Sequencing|
|Maintainer||Michael Love <firstname.lastname@example.org>|
|License||GPL (>= 2)|
|Package repository||View on Bioconductor|
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