plot.exomeCopyObject: Plot function for exomeCopy

In exomeCopy: Copy number variant detection from exome sequencing read depth

Description

Plots the predicted copy count segments of an ExomeCopy object

Usage

## S3 method for class 'ExomeCopy'
plot(x, points = TRUE, cols = NULL, show.legend = TRUE,
main = "exomeCopy predicted segments", xlab = "genomic position",
ylab = "normalized read count", xlim = NULL, ylim = NULL, cex = 1, lwd = 4, ...)

Arguments

x	The ExomeCopy object.
points	Logical, whether normalized read counts should be drawn.
cols	A vector of the same length as b, specifying a color for each of the states of the HMM.
show.legend	Logical, whether a default legend should be shown.
main	main title
xlab	x axis label
ylab	y axis label
xlim	x limits
ylim	y limits
cex	size of the points (if plotted)
lwd	line width
...	Other arguments passed to plot()

See Also

exomeCopy ExomeCopy-class copyCountSegments

Examples

example(exomeCopy)
plot(fit)

exomeCopy documentation built on Nov. 8, 2020, 7:45 p.m.