Plot function for exomeCopy

Description

Plots the predicted copy count segments of an ExomeCopy object

Usage

1
2
3
4
## S3 method for class 'ExomeCopy'
plot(x, points = TRUE, cols = NULL, show.legend = TRUE,
main = "exomeCopy predicted segments", xlab = "genomic position",
ylab = "normalized read count", xlim = NULL, ylim = NULL, cex = 1, lwd = 4, ...)

Arguments

x

The ExomeCopy object.

points

Logical, whether normalized read counts should be drawn.

cols

A vector of the same length as b, specifying a color for each of the states of the HMM.

show.legend

Logical, whether a default legend should be shown.

main

main title

xlab

x axis label

ylab

y axis label

xlim

x limits

ylim

y limits

cex

size of the points (if plotted)

lwd

line width

...

Other arguments passed to plot()

See Also

exomeCopy ExomeCopy-class copyCountSegments

Examples

1
2